KEGG   Azoarcus sp. CIB: AzCIB_2756
Entry
AzCIB_2756        CDS       T04019                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
azi  Azoarcus sp. CIB
Pathway
azi03030  DNA replication
azi03410  Base excision repair
azi03420  Nucleotide excision repair
azi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:azi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AzCIB_2756
   03410 Base excision repair
    AzCIB_2756
   03420 Nucleotide excision repair
    AzCIB_2756
   03430 Mismatch repair
    AzCIB_2756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:azi03032]
    AzCIB_2756
   03400 DNA repair and recombination proteins [BR:azi03400]
    AzCIB_2756
Enzymes [BR:azi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AzCIB_2756
DNA replication proteins [BR:azi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AzCIB_2756
DNA repair and recombination proteins [BR:azi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AzCIB_2756
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AzCIB_2756
   MMR (mismatch excision repair)
    DNA ligase
     AzCIB_2756
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AzCIB_2756
SSDB
Motif
Pfam: DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 DNA_ligase_aden 5_3_exonuc DprA_N DZR_2
Other DBs
NCBI-ProteinID: AKU12649
Position
complement(3093682..3094824)
AA seq 380 aa
MNRREDQLSLGFVSRAPRWAVAHKYPAQEEITELLGIEVQVGRTGALTPVARLKPVFVGG
VTVTNATLHNEEEILRKGVLIGDQVIVRRAGDVIPEVVGPVVERRTGSEQAFVMPTRCPV
CASHVEKAEDEVVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVEAGIVKT
PADLYKLGVLALANLPRMAEKSAANLLAAIEKSRHTALARFIFALGIRNVGEATAKDLAR
HFGSLDALMAATPEQLLEVRDVGPVVAQSIAGFLAEAHNREVIEQLRAAGVTWEEGEPAA
PATGSASGKVFVLTGTLPAMSRDEAKALIETHGGKVSGSVSKKTDYVVAGAEAGSKLAKA
EELGVAILDEDGLRRLLEQG
NT seq 1143 nt   +upstreamnt  +downstreamnt
gtgaatcgccgtgaggaccagttaagtcttgggtttgtctcgcgtgctccgcgctgggcc
gtcgcgcacaagtaccctgcgcaggaagagatcaccgagctactcggcatcgaggtacag
gtcgggcgcaccggcgcgctgacgccggtcgcacgcctgaagccggtgttcgtcggcggg
gtcacggtgaccaacgcgaccctgcacaacgaagaggaaatcctgcgcaagggcgtgctg
atcggcgatcaggtcatcgtacggcgggccggcgacgttatacctgaggtcgtcggtccg
gtcgtcgagcggcgcacgggcagtgagcaagccttcgtaatgccgacgcgctgccccgtg
tgcgcgtcgcacgtcgagaaggccgaggacgaggtggtggcgcgctgcacgggcgggctg
ttctgtcccgcgcagcgcaagcaggccctgctgcatttcgccgggcggcgcgcgatggac
atcgaggggctgggcgacaagctggtcgaccagctcgtcgaggcgggcatcgtgaagacg
ccggcggatctgtacaagctgggcgtgctggcactggcgaatctgccgcgcatggccgag
aagtcggcggccaacctgctcgcggcaatcgagaagagccggcacacggcgctggcgcgc
ttcatcttcgcgctcggcatccgcaatgtcggcgaggccacggcaaaggatctggcgcgg
catttcggctcgctggacgcgctgatggctgcgacgccggagcagttgttggaggtgcgc
gacgtcggaccggtggtcgcacagagcattgccggcttccttgccgaagcgcacaaccgc
gaggtgatcgagcagttgcgcgcggcgggggtgacgtgggaagagggtgagcccgcggct
ccggccacgggcagtgcgagcggcaaggtcttcgtgttgaccggcacgctaccggcgatg
agccgggacgaggcgaaggccctgatcgagacgcatggcggcaaggtcagcgggtcggta
tcgaagaagacggattacgtggttgcgggcgcggaagccggttccaagctcgcgaaggcg
gaagaactcggcgtggcgatcctcgacgaggacggactgcgacgcctgctcgaacaaggt
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (31)   

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