KEGG   Azoarcus sp. CIB: AzCIB_2777
Entry
AzCIB_2777        CDS       T04019                                 
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
azi  Azoarcus sp. CIB
Pathway
azi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:azi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AzCIB_2777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:azi03019]
    AzCIB_2777
   03009 Ribosome biogenesis [BR:azi03009]
    AzCIB_2777
Messenger RNA biogenesis [BR:azi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AzCIB_2777
Ribosome biogenesis [BR:azi03009]
 Prokaryotic type
  rRNA helicases
   AzCIB_2777
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 DXP_reductoisom
Other DBs
NCBI-ProteinID: AKU12670
Position
3115804..3117705
AA seq 633 aa
MNPTIESFAQLELSPPILEALAGIGYETPSPIQAACIPHLRAGHDLLGEAQTGTGKTAAF
ALPLLDRLDLSARNPQVLVLTPTRELAIQVAEAFQRYAKNLPGFHVLPIYGGQSMVVQLR
QLSRGAHVVVGTPGRVMDHIERASLNLGDLKTLVLDEADEMLRMGFIDDVEWILEHVPAE
RQTALFSATMPDAIRRVAHRYLREPREVKIKTATTTVTTIRQRFCQIAVAHKLDALTRIL
EVEEEFDAAIVFVRTKTATVELAEKLEARGYAAAALNGDMTQQLRERVIEQLKGGSLDIV
VATDVAARGLDVPRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV
IERATRQPIEPLQLPSREAVADKRVTAFRQQVATVLESEDLDFFREVVAGMEDSHDADLH
DIAAALAFLAQRERPLQLPRSAGPDIAAAQSAPRAERPPRENRDALLERRRDFADGRLQR
YRIEVGRNQQATPKDIVGAIANEAGIESRFIGQINLYEDYSTVELPGDLPNDVLDILRRV
RVRQRQLNIRPLDHDEAQRDAARPRPGPGPRFGAKPAPRGEDAPRKPFAKPWDKPAGKPG
GDRPQGGKPFHSDHRDTQGTGFKPAKKKPQRDR
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgaaccccactatcgaatcctttgcacagctcgagctgagccccccgatcctcgaagcc
ctcgccggcatcggatacgaaaccccgtcgccgatccaggcagcctgcatcccgcacctg
cgcgccgggcatgacctgctgggcgaagcccagactggcaccggcaagacggcggccttc
gcgctgccgctgctcgaccgcctcgacctctccgcccgcaacccgcaggtcctcgtactg
accccgacacgcgaactcgcgatccaggttgccgaggccttccagcgctatgcgaagaac
ctgcccggctttcacgtgctgccgatatacggcggccagagtatggtcgtgcagctgcgc
caactgagccgcggcgcgcatgtcgtcgtcggcaccccgggacgcgtgatggaccacatc
gagcgcgcgagcctcaacctcggcgacctcaagacgctggtgctcgacgaggccgacgag
atgctgcgcatgggcttcatcgacgacgtcgaatggatcctcgagcacgtcccggcggaa
cggcagaccgcgctgttctccgcgacgatgccggacgcgatccggcgcgtcgcgcaccgc
tacctgcgcgagccgcgcgaggtgaagatcaagaccgccacgaccaccgtgacgacgatc
cgccagcgcttctgccagatcgccgtcgcgcacaagctcgacgccctcacgcgcatcctc
gaggtcgaggaggagttcgacgccgcgatcgtcttcgtacgtaccaagaccgccaccgtc
gagctcgccgagaagctcgaggcgcgcggctatgccgccgccgcactgaacggcgacatg
acccagcagctgcgcgaacgggtcatcgaacagctcaagggcggcagcctcgacatcgtc
gtcgcgaccgacgtcgccgcgcgcggcctggacgtgccgcgcatcagccacgtcatcaac
tacgacatcccctacgacaccgaggcctacgttcaccgcatcggccgcaccggtcgcgca
ggccgcaccggcagcgccatcctcttcgtcgcgccgcgcgagatgcgcatgctgaaggtg
atcgaacgggcgacgcgccagccgatcgaaccgctgcaactgccgtcacgcgaagccgtc
gccgacaagcgcgtgaccgccttccgccagcaggtggcgacggtgctcgaatccgaagac
ctcgacttcttccgcgaggtcgtcgccggcatggaggacagccacgacgccgacctccac
gacattgccgccgccctcgccttcctcgcacagcgcgaacgccccttgcagctgccgcgg
agcgccggcccggacatcgccgcagcccaatccgccccgcgcgcggaacgccccccgcgc
gaaaaccgcgacgccctcctggagcgccgccgcgacttcgccgatggacgcctgcagcgc
taccgcatcgaggtcggccgcaaccagcaggcgacccccaaggacatcgtgggcgcgatc
gcgaacgaagccggcatcgaaagccgcttcatcggccagatcaacctgtacgaggattac
agcaccgtcgaactgccgggcgacctgccgaacgacgtcctcgacatcctgcgtcgtgtg
cgcgtgcggcagcgccagctgaacatccgtccgctggaccacgacgaggcgcagcgcgac
gccgcgcgcccccggcccggccccggcccgcgcttcggcgcgaagcccgctccgcgcggc
gaggacgcgccccgcaaaccctttgcgaaaccgtgggacaagcccgccggcaaacctggc
ggcgatcgcccgcagggcggtaagccgttccactccgaccatcgcgacacgcagggcact
ggcttcaaaccggccaagaagaagccgcagcgcgatcgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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