KEGG   Balaenoptera acutorostrata scammoni (minke whale): 103005214
Entry
103005214         CDS       T03086                                 
Symbol
LSM6
Name
(RefSeq) LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
bacu  Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03018  RNA degradation
bacu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bacu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103005214 (LSM6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103005214 (LSM6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bacu03019]
    103005214 (LSM6)
   03041 Spliceosome [BR:bacu03041]
    103005214 (LSM6)
Messenger RNA biogenesis [BR:bacu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103005214 (LSM6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103005214 (LSM6)
Spliceosome [BR:bacu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103005214 (LSM6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 103005214
NCBI-ProteinID: XP_007189439
UniProt: A0A384APZ2
Position
Un
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctgcggaagcaaacacccagtgacttcctgaagcaaatcatcggacgaccagtt
gtggtaaaattaaattctggagtggattaccgaggggtcctggcttgcctggatggctat
atgaatatagccttggagcagacagaggagtatgtaaatggacagctgaagaataagtac
ggggatgcatttatccgaggaaacaatgtgttgtacataagtacacagaagaggaggatg
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (285)   
   KEGG ORTHOLOGY (1)   
   RefGene (281)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (300)   

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