KEGG   Bacillus sp. YP1: QF06_07395
Entry
QF06_07395        CDS       T03701                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bacy  Bacillus sp. YP1
Pathway
bacy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bacy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QF06_07395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bacy03019]
    QF06_07395
   03016 Transfer RNA biogenesis [BR:bacy03016]
    QF06_07395
Enzymes [BR:bacy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     QF06_07395
Messenger RNA biogenesis [BR:bacy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     QF06_07395
Transfer RNA biogenesis [BR:bacy03016]
 Prokaryotic type
  tRNA degradation factors
   QF06_07395
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 SPATA25
Other DBs
NCBI-ProteinID: AJO58293
Position
1485540..1487657
AA seq 705 aa
MGQEKHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQNCSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVA
GTKDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDE
ELNEKVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSK
LVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGAL
GDVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEK
DFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLT
DIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLA
TLSESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISS
TDESGNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERV
GKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLREEKEKEEQQS
NT seq 2118 nt   +upstreamnt  +downstreamnt
atgggacaagaaaaacatgtctttaccatagattgggccggaagaacgcttactgttgaa
accggccagcttgccaaacaggcaaatggtgctgtgatgatccgctacggtgatacagca
gtacttagtacagcaaccgcttcaaaagaacctaaaccgcttgatttcttccctcttact
gtaaactatgaagaaagattatatgcggtagggaaaattccgggcggatttattaaaaga
gaaggacgtccaagtgaaaaagcggttcttgccagccgtttaattgaccgtccgatccgt
cctttgtttgccgatggattccgtaatgaagttcaagtcatcagcattgtcatgagtgtt
gaccaaaactgctcttcagaaatggctgccatgttcggttcatctcttgcactttctgta
tcggatattccgtttgaaggaccgattgcaggggttactgtcggacgcattgatgatcaa
tttatcattaacccgacagtcgatcagcttgaaaaaagcgatatcaatcttgtcgttgcc
ggcacgaaagatgcgattaacatggtagaagcgggagcggacgaagttcctgaggaaatc
atgcttgaggccattatgttcggccatgaagagattaaacgcctgattgcattccaagaa
gaaattgttgcagcagtcggcaaagagaaatctgaaattaagctctttgaaattgatgaa
gagcttaatgaaaaagtaaaagctttggcagaagaggatctgctgaaagccatccaagtt
catgaaaagcatgcccgtgaagatgccattaacgaagtgaagaacgcagttgtggcaaaa
ttcgaggatgaagaacatgatgaagacacaatcaagcaagtgaagcagattttatccaag
ctggtgaaaaatgaagttcgccgcctgattactgaagagaaagtaagaccggatggccgc
ggtgtcgatcaaatccgcccgctatcttcagaggttggcctcttgccaagaacgcacggt
tcaggtctatttacaaggggacaaactcaggccctcagcgtatgtacgctaggtgctctg
ggagatgtgcaaatccttgacggcttaggtgtcgaagagtcgaaacggtttatgcatcat
tacaacttcccgcaattcagcgttggggaaacaggaccgatgcgcggaccgggacgtcgt
gaaatcggacacggagcactgggtgagcgtgcgcttgagccagttattccgtctgaaaaa
gacttcccttatactgtccgtcttgtttcagaagtgcttgaatcaaacggttctacatct
caagcaagcatttgcgcaagcacacttgcaatgatggatgctggtgtaccgattaaagcg
ccagttgctggtattgcgatgggtcttgtcaaatcaggcgaacattacactgtcttgact
gacatccaaggcatggaagatgcgctcggagatatggactttaaagtagcgggaactgaa
aaaggcgtaacggccctgcaaatggacattaaaattgaaggcctttccagagagattctt
gaagaagcgcttcagcaggcgaaaaagggcagaatggaaatcctcaacagcatgcttgca
acattaagcgaatcaagaaaagagctttctcgatatgcgcctaagatcttaacaatgacc
attaatcctgataaaatccgcgatgtcatcggaccaagcggaaaacaaatcaataagatc
atcgaagaaaccggtgttaaaattgatattgagcaggacggcacaatctttatttcctct
acagatgaaagcggcaaccaaaaagcgaaaaaaatcatcgaagaccttgttagagaggtt
gaagtcggccaactttacctaggtaaagtgaaacggattgaaaaattcggggctttcgtt
gaaattttcagcggaaaagacggtttggtgcacatttcagagcttgcgcttgaacgagta
gggaaagttgaagatgttgtaaaaatcggagacgagattcttgtcaaagtcactgaaatt
gataaacaaggacgagtgaatttatcccgcaaagcggtgctccgtgaagagaaagaaaaa
gaagaacaacaatcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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