KEGG   Bacillus atrophaeus: BATR1942_06480
Entry
BATR1942_06480    CDS       T01339                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
bae  Bacillus atrophaeus
Pathway
bae02024  Quorum sensing
bae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BATR1942_06480 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BATR1942_06480 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bae03019]
    BATR1942_06480 (hfq)
   03036 Chromosome and associated proteins [BR:bae03036]
    BATR1942_06480 (hfq)
Messenger RNA biogenesis [BR:bae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BATR1942_06480 (hfq)
Chromosome and associated proteins [BR:bae03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BATR1942_06480 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ADP32250
UniProt: A0A0H3DZ25
Position
1329030..1329251
AA seq 73 aa
MKPINIQDQFLNQIRKENTFVTVFLLNGFQLRGQVKGFDNFTVLLETEGKQQLIYKHAIS
TFAPQKNVQLDLE
NT seq 222 nt   +upstreamnt  +downstreamnt
atgaaaccgattaatattcaggatcagtttttgaatcaaatccgaaaagaaaatacgttt
gttactgtttttttactaaacggctttcagttgcgcggccaagtgaaaggctttgataac
tttacggtattgcttgaaaccgaaggaaagcagcagcttatatataaacatgccatctct
accttcgccccgcaaaaaaacgtccagcttgacctcgaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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