KEGG   Borrelia afzelii (FLI): BAPKO_0403
Entry
BAPKO_0403        CDS       T00383                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
baf  Borrelia afzelii (FLI)
Pathway
baf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:baf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BAPKO_0403 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:baf03021]
    BAPKO_0403 (rpoC)
   03400 DNA repair and recombination proteins [BR:baf03400]
    BAPKO_0403 (rpoC)
Enzymes [BR:baf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BAPKO_0403 (rpoC)
Transcription machinery [BR:baf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BAPKO_0403 (rpoC)
DNA repair and recombination proteins [BR:baf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BAPKO_0403 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABH01659
UniProt: Q0SNB9
Position
complement(399748..403881)
AA seq 1377 aa
MKEIKDFEKIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKSLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPSAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNTVGEGKKFLNFNNVILAINNRSLDYNASIYVK
IDGKYKKTTAGRVIFNEALPNGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPDEKKAYIDRANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNTFILNGIEGFNVRVENGILFTRKGTLKIINVFYEEKIKNIKEI
KVSDSQRVIKGIPLFVNNKGVEILSSYIGYVKLRDDKFLIVSEEQEVSLKAGTKLEIEVG
EYVESGKVIGTFDPFAEPIIAEVKGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSGGVEIASYVLPGDAYLQVEDGQNINIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
IVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENVNSEV
NT seq 4134 nt   +upstreamnt  +downstreamnt
atgaaagagataaaagattttgaaaaaataaaaattaaaatagcatctcctgatcaaatt
agaaattggtcttatggagaggttaaaaagtctgaaactattaattatagaactttgaga
cccgagaaggatgggcttttttgtgagaggatttttggtactacaaaggaatgggaatgt
tattgtggtaaatttaaatcagttagatataaaggcattatttgcgatcgttgtaatgta
gaggttacccattttaaggtgaggcgtgagagaatggggcatattgagttagcagctcca
gttgctcatatttggtattataaatatatcccctctagaattggtcttttgcttgacatt
acggcatctagtttgaattctattctatattatgaaaaatatgtagtaattgaaccaggt
gatactgatcttaaaaaaatgcagcttttaaatgaagatgagtacatagaggctagagag
cgatatgggatgtcttttaatgcttctatgggagctgaagctattaaaagtcttcttgaa
aatcttgatcttgatgagctttcatctaagcttagaattcaaatgatagataaagatgat
aaaactgataagaaactcttaagacgtcttgaaattattgaaaattttaaaatttctgga
aataaaccagaatggatgattatggaagttcttcctgttatccccccagagattaggcca
atggttcagcttgatggaggacgctttgcaacatctgatcttaatgatctttacagaaga
gttataaataggaataatcgcttaaggaagttgcttcttcttaatgcgccagagattatt
gtgagaaatgaaaaaagaatgcttcaagaatcggtagactctctttttgacaattctcat
aaaagaaaggttgttaaaggctcatctagtaggcctcttaagtcgctttccgatgcgtta
aaaggtaagcagggaagatttaggcaaaatcttcttggtaaaagagtagattattctggt
cgttctgtgattgttgttggacctgagttaaaactacatcaatgtggattgcctgcaaaa
atggctcttgagctgtttaagccttttgtgataagaaggttgattgagagtgaagctgtt
tttaatattaaaagagcaaagaatttgatcgaacaagaagttgacgaggtatggcaaatt
ttagatcttgttatcaaagagcatcctattcttttaaatagggcacccacccttcataga
cttggaattcaagcttttgagcctgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggtgatcaaatggcagtacatgtacct
cttactccatcagcacaagctgaaagttgggctttaatgctttcaacaaataatctttta
aatcccgctaatgggcatcctattgtttttccatcccaagatattgttttaggtctatat
tatttaacaatggaaaaaaagaatactgttggagaaggtaaaaagtttttaaactttaat
aatgttattcttgctataaataataggagtctagattacaatgcttctatttatgtaaaa
attgatggcaaatataaaaaaactacagctggtagggttatatttaatgaggccttgccc
aacggaattgaatttgtaaataaaactcttagtgatttggaactacaaattttaatatca
aaagtttatgtagttcatggttcttctactgtaattgaaatgcttgacattatcaaggag
cttggctttaaatatgctaccaagtttggatgcacaattagtatgagtgatattattgtt
cctgatgaaaagaaagcttatatagacagggccaataaagagattgctaaaattcaaaat
gattatgctaaaggtgttattaccggtgaagagcgttataataacgtagtttctgtttgg
ttaaagacgaacgaggaacttactaataagatgatggaaattttaaagaaagacagagat
gggtttaatgttatatatatgatggcagattctggtgctaggggtagtagaaatcaaata
aggcaacttgctggcatgagaggattgatggcaaaaacttccggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagtttttcatctctacaaat
ggagcgagaaaggggctggcagatactgctcttaagactgctgatgctggatatttaact
cgaagattagtagatattgctcaagatgttgttgttagaatagaagattgtgggactata
aacggaataaaagttgaaactgtaaaaaatggtgaagaaatattagaatctttgaaagaa
aaagctgttgggagctattctattgaaagaataaaaaatccaattactggtgagattgtt
ttagatgcaaatgaagaaatctcagaagctaaaatagaattattagaaaaaattggtatt
gaaaaacttgtgattagatctgttttaacatgtgaagctgaacacggtgtttgtcaaaaa
tgttatggtagagacttttcaaagaataagcctgttaacattggcgaggctgtaggaata
attgctgctcagtctataggtcagccaggcactcaattaactatgagaacttttcatatt
ggtggagttgctcaggctggtagtgaggatgataaaatatctttaaagaatacttttata
cttaatggcatagagggttttaatgttagggttgagaatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaagaaaaaattaagaacataaaggaaatt
aaagtttcagattctcaaagagtaattaaaggaattcctttatttgttaataataaggga
gtagaaattctctcttcttatattggttatgttaaattaagagacgataaatttttaata
gtgtcagaagagcaagaagtttccttgaaagctggtacaaagcttgaaatagaggttggc
gaatatgttgaatcgggcaaagttattggtacgtttgatccatttgcagagcctattatt
gcagaggttaaaggtaaaattaaatttaaggatattattttaggaactactcttaaagaa
gagataaatactgaaacaggtaatgttgagaaaagaattacagataatgtttttgaatct
cttgatcctagaatttttattattgatagtggtggtgtggagatcgcatcttatgtatta
ccaggcgatgcttatcttcaagttgaagatggtcagaatattaatataggagatattatt
gcgaaactttctaaaggttctgaaaaaactcaagatattacagggggattgcctcgtgtt
aatgatctttttgaaacaagaattcctaagaatttaactgaaatggctaaagtaagtgga
attgtgcaatttaaatcaattcaaaaaggaaaaagacttattaatattttagatgaatat
ggggttgagcataagcattatattccagccggcaaacatcttttagttagagatggagat
attgttaaggcaggagatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attttgggtgggattagtttacaagagtttttgttggcagaaattcaagatgtttatcga
aaacagggtgttagcattaatgacaaacatattggtgtgataattaagcaaatgatgaaa
aaagttaagattgtagcagttggtgatactaattttgtttatgggcaaaaggtagataag
cacactttttatgagcagaatagaaaagttatcgaacaaggtggtgagccagcaatagca
agtcccattcttataggagtaaccaagacttctcttaatatagattcttttatttctgca
gcttcttttcaggagacaacaaaagtattaacagatgcttctattgctgggaaaatagat
gatcttagaggattgaaagaaaatgttgtaattgggcatttgattcctactggaactggc
atgggactttataaaaaaatcaaagttagtgaaaatgtcaattctgaagtttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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