KEGG   Buchnera aphidicola JF99 (Acyrthosiphon pisum): CWS_00175
Entry
CWS_00175         CDS       T02354                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bajc  Buchnera aphidicola JF99 (Acyrthosiphon pisum)
Pathway
bajc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bajc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CWS_00175 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bajc03021]
    CWS_00175 (rpoB)
   03400 DNA repair and recombination proteins [BR:bajc03400]
    CWS_00175 (rpoB)
Enzymes [BR:bajc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CWS_00175 (rpoB)
Transcription machinery [BR:bajc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CWS_00175 (rpoB)
DNA repair and recombination proteins [BR:bajc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CWS_00175 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: ADP67015
Position
complement(40622..44650)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQPDLSGQNGLEAAFRSVFPIR
GYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDILEATVKDIKEQ
EVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIENNKIVLE
LVPERLRGETASFNIKKNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEYILGRIVSKN
YVDKKTGETIISSNTELSLEILEKLKKSGFYSIETLFTNDLDHGPYISETLRIDSSNDRM
SALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLREETKGSSTL
NKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERLS
IGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPYRKVCNGLVS
EEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVNYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVDSGVTAVAKR
SGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCVNLGEKIKKG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCIS
RDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDMQLKKIKQDL
TEEFKIFESSLFTHIKKTFISLDIETKQLDTLPFEKWFSVDIKQKDKKKEIEKLAKQHHE
LKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINHMLKTQEKISN
LRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKNGIPISTPVFDGAQENEIKQMLK
FAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELESE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttataccgaaaaaaaacgtattcgtaaagattttggcaaacgtcctaaa
gtgttagatataccatatcttctttcgattcaattaaattcttttaaaaaatttattcaa
ccagatttatcaggtcaaaacggattagaagcagcatttcgttctgtatttcctattcgc
ggttataatggaaactctgaattacaatatgttagttaccgtttaggagaaacaatattt
gatgttaaagaatgtcaaataagaggtgctacttattcggcgccactgagagtaaaatta
cgccttgttatctacgaacgtgacatattagaagctactgttaaagacattaaagaacaa
gaagtatatatgggtgaaattccattaatgactaacaatggaacatttataataaatgga
acagaaagagtagttgtttctcagttacaccgtagtcctggagtcttttttgatagtgat
aaaggtaaaacacactcctcaggaaaagttctatataatgcccggattattccttatcgc
ggttcttggttagattttgaatttgatccaaaagataatttatttgttagaattgataga
cgtagaaagctaccagtaagcattattttgcgggctcttaattataatacagaagaaata
ttaaacatattttttgagaaaaatatttttaaaatagaaaataacaaaattgtattagaa
ttagttcccgaaagactccgaggtgaaactgcatcatttaatattaaaaaaaatggaata
atatatgtagaaaaaggtcgtcgtattactgctaaacatattcaagaattaaaaaataat
aaaataaaatctatcacagttcctgttgaatatattcttggaagaattgtatctaaaaat
tatgtagataaaaaaacaggcgaaacaattatttcttctaatacagaattatctttagag
atattagaaaaattaaaaaaatcaggtttctactctattgaaacattgtttactaatgat
ttagatcatggtccatatatatcagaaacgttacgaatagattcatctaatgatcgtatg
agtgctttaatagaaatttatcgagttatgaggccaggagaaccacctactaaagaggca
acagaaaatttattcgaaaatttatttttttctgaagacagatacgatctttctactgta
ggtagaatgaaatttaacagatcccttttacgtgaagaaactaaaggttcaagtacgtta
aataaagaagacatcattgatgttataaaaaaaattatcgatatccgaaatggaaaagga
gaagtagatgatattgatcatctaggaaatcgacgtgttagatcagtaggtgaaatggcg
gaaaaccaatttagaatcggtttagtaagagtggaaagagcagttaaagaaagattgtct
atcggcgatttagatacgcttatgccacaagatatgattaatgctaaaccaatatcagct
gcggttaaagaattttttggttctagtcaattatcacaatttatggatcaaaataatcct
ttatcagaaattacgcataaaagaagaatttcagcattaggtttaggtggtttaactaga
gaaagagcaggttttgaagttcgagatgtacatccaacacattatggacgagtatgtcct
atcgaaacaccagaaggtccgaatattggattaattaattctttatctgtgtacgctcaa
acaaattcttatggatttttagaaacaccttatcgaaaagtttgtaacggtttagttagt
gaggaaattcattatctatcagctatagaagaaggcaattatattattgcacaagctaat
actaatatcgataaaactggtttttttactgacgatttagtaacttgccgacataaaggc
gaatctagtttattcaaccgtaatcaagtaaattatatggatgtatctactcaacaaatt
gtatctgttggagcgtctttaattccttttcttgaacatgatgatgctaatagagcactg
atgggtgctaatatgcaacgtcaagcagtacctacccttaaaacagataaacctttgata
gggaccggaatggaacgagcagtagcagtagattctggtgttacagcagtagctaaaaga
agtggtgttgttcaatatgtagatgcttcacgtatagtaataaaagtagatgaaaaagaa
atgtattcaagagaagctggaatagatatttataatcttactaaatatactcgatctaat
caaaatacttgtattaatcaacagccctgcgttaatttaggcgaaaaaattaaaaaaggt
gatgttctagcagacggtccatctacagatttaggagaacttgcattaggacaaaatatg
cgtgtagcatttatgccatggaatggatacaattttgaagattcaatattagtctcagaa
agggttgttcaagaagatcgcttcaccacaattcatattcaggagttatcttgtatatca
agagatactaaattaggagcagaagaaattagttcagatataccaaatgtaggagaagct
gcattatctaaattagacgaatcaggaattgtttatattggagcagaagtaactggcggc
gacatactagttggcaaagtaactccaaaaggggaaacacaattaactccagaagaaaaa
ttattacgtgctatttttggtgaaaaagcatcagatgtaaaagattcttcattacgagta
ccgaatggagtatcaggtactgtgatagatgtacaaatatttacaagagatggtgtaaaa
aaagataaaagagctttagaaattgaagacatgcaactgaagaaaatcaaacaagatctt
actgaagaattcaaaatatttgaatctagtttatttactcatattaaaaaaacttttata
tcgcttgatattgaaacaaaacagcttgatacactaccttttgaaaaatggttttctgta
gacattaaacaaaaagacaaaaaaaaagaaatagaaaaacttgctaaacaacatcatgaa
ttaaaagaagaatttaataaaaaaatagaaataaaacgtcaaaaaattacacaaggcgat
gatcttgctcctggtgttttaaaaatagttaaagtgtatttagcagttaaacgtcagatt
caacctggcgataaaatggcaggaagacatggaaataaaggagtaatttctaaaattaat
cctattgaagatatgccttatgacgaaaatggtataccagttgatattgttttaaatcca
ttaggtgtaccctctcgtatgaatatcggtcagatactagaaacacatttaggtatggcg
gcaaaaggtattggtgataaaatcaatcatatgcttaaaacacaagaaaaaatatctaat
ttacgaaaatttatacaaaaagcttttgacttaggagataacctgagacaaaaagtaaat
ttagatacattttccaatgaagaaatattacgtttagcaaagaatttaaaaaatggcatc
cctatttctacaccggtatttgatggtgcacaagaaaatgaaataaaacaaatgttgaaa
tttgcaggtttacctacttcaggtcaaattatactttttgatggaagaacaggcgaaaaa
tttgaaagacctgttactgttggttatatgtatatgttaaaattaaatcacttagtagac
gataaaatgcatgctcgttctactggatcttatagtttagtgactcaacaaccattaggt
ggaaaagctcagtttggtggacagcgtttcggtgaaatggaagtttgggcattagaggcg
tacggagcgtcttatacgttacaagaaatgttaaccgtgaaatctgatgacgttaatgga
agaactaaaatgtataaaaatattgtagatggaaatcatcaaatggaacctggaatgcca
gaatcttttaatgtacttttaaaagaaattcggtcattagggattaatattgaactagaa
agcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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