KEGG   Bacillus sp. LM 4-2: BsLM_0022
Entry
BsLM_0022         CDS       T03908                                 
Name
(GenBank) DNA polymerase III, subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
balm  Bacillus sp. LM 4-2
Pathway
balm03030  DNA replication
balm03430  Mismatch repair
balm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:balm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BsLM_0022
   03430 Mismatch repair
    BsLM_0022
   03440 Homologous recombination
    BsLM_0022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:balm03032]
    BsLM_0022
   03400 DNA repair and recombination proteins [BR:balm03400]
    BsLM_0022
Enzymes [BR:balm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BsLM_0022
DNA replication proteins [BR:balm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BsLM_0022
DNA repair and recombination proteins [BR:balm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BsLM_0022
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 AAA RuvB_N AAA_30 TIP49 AAA_5 AAA_22 AAA_19 AAA_16 DNA_pol3_delta_C AAA_assoc_2 DnaX_C PIF1 Rad17 Mg_chelatase AAA_7 AAA_24 AAA_14 AAA_28 DUF815 RNA_helicase GIDA_C_1st
Other DBs
NCBI-ProteinID: AKE21823
Position
26405..28096
AA seq 563 aa
MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK
AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY
KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS
QAIVGRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI
TGAVSQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG
LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQT
SHQSAADLPEVDMLMKKIQQLEQEVERLKTTGIKAAAESPKKEAPRVPKGGKSNYKAPVG
RIHEILKEATRPDLDLLRNSWGKLLAHLKQQNKVSHAALLNDSEPVAAGSAAFVLKFKYE
IHCKMVAEDNNGVRTNLEQILESMLGKRMDLIGVPEAQWGKIREEFLEDHQQENEGSNVP
AEEDPLIAEAKKLVGADLIEIKD
NT seq 1692 nt   +upstreamnt  +downstreamnt
gtgagttaccaagctttatatcgagtattcaggcctcagcgctttgaagatgtggtcgga
caagaacacattacaaaaacgctgcaaaatgcccttttgcaaaaaaagttttctcacgcc
tatctgttttccgggccaagaggaaccggaaaaaccagtgcagccaaaatatttgctaag
gctgtcaactgtgaacatgctcctgttgatgagccatgcaacgaatgtgcggcctgtaaa
gggataacaaacgggtcaatatccgatgtcatagaaattgacgccgcttctaataacggt
gttgatgagattcgtgacattcgcgataaagtgaagtttgccccatcggccgtcacatat
aaggtatatatcatagatgaggtgcatatgctttctatcggcgcttttaatgcattacta
aaaacattagaagagccgcctgagcattgtatcttcatattagcaacaactgaaccgcac
aaaattcctttaaccattatctctagatgtcagcgttttgactttaaacgaattacctcc
caagcgattgtagggcgcatgaataaaattgttgatgctgaacagctgcaagtggaggaa
ggatcgctggatatcatcgcgagtgctgcagacggagggatgagggatgccctgagcctt
cttgatcaggccatatcattcagcggcgatatcctgaaagtcgaagatgcgcttttaatt
acgggtgctgtttctcaattatatatcgggaagcttgcacaatccctgcatgataaaaac
gtttctgacgcactggaaacattaaatgaattgcttcagcaaggaaaagatccagctaag
ctgatagaagatatgattttctatttcagggacatgctgctgtacaaaacagcccctggc
ttagagggagtgcttgagaaagtaaaagtcgatgaaacgttccgggaactaagtgaacaa
attccggctcaggccctatatgaaatgattgatattctgaacaagagccatcaggaaatg
aaatggacaaatcatccgcgtatctttttcgaagtggccgttgtgaagatttgccaaacc
tcacatcaatctgctgctgatctcccggaagtggatatgctgatgaaaaaaatccagcag
ctcgaacaggaagtagagcggctcaaaacaacgggcataaaagcagctgcggaaagccct
aaaaaagaagcgccgcgtgtgccaaagggcgggaaatccaattacaaagcgccagtaggc
agaattcatgagattttgaaggaagccacaagaccggatcttgatctgctcagaaacagt
tggggcaagcttcttgctcatctcaaacagcaaaacaaagtatcacatgccgctttgctg
aatgacagtgaacctgtggctgccggatcggcggcatttgttctgaaattcaaatatgaa
attcattgtaaaatggtcgctgaggataacaacggagtccggactaatcttgaacagatt
ttagaatcgatgctcggaaaaagaatggatttgattggcgttccagaagcacaatggggt
aaaataagagaagaatttttagaagatcatcagcaggaaaatgaaggatcaaatgtaccg
gctgaagaagacccgcttattgccgaagcgaaaaagcttgttggagcggatttaattgaa
ataaaagactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (23)   
   Pfam (23)   
All databases (35)   

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