KEGG   Bartonella alsatica: HWV54_06495
Entry
HWV54_06495       CDS       T06670                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bals  Bartonella alsatica
Pathway
bals03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bals00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HWV54_06495 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bals03021]
    HWV54_06495 (rpoC)
   03400 DNA repair and recombination proteins [BR:bals03400]
    HWV54_06495 (rpoC)
Enzymes [BR:bals01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HWV54_06495 (rpoC)
Transcription machinery [BR:bals03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HWV54_06495 (rpoC)
DNA repair and recombination proteins [BR:bals03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HWV54_06495 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: QLC52486
Position
1581505..1585716
AA seq 1403 aa
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELEKIANDLRVELSETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVTEKEPGEGMAFADMGELHHALE
NKILTLHTKIKGRVKNMGKDGKEVSRLYDTTPGRLIIGELLPKNPNISFDIVNKEMTKKN
ISKMIDQVYRHCGQKEIVIFCDRIMQLGFSYACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGIVEIRNRN
VVRNSEGHLVVMGRNMAILIKDEAGKERVVHRVSYGAHIFVDDGDVVKCGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIIIHADKK
GNTIAKLHKGGEARYMMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDEKFESVEYLIPKGKLFHFQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIPGDNVDRIELDEINDNLIAEGKRPASGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDDLIVDER
RKSSNNEIAKAMLTNMVTETVSE
NT seq 4212 nt   +upstreamnt  +downstreamnt
atgaaccacgaggtcatgaatcttttcaatcctcaagcaccagcacagacatttgactct
attcgtatttccattgcgagtcctgaaaagattttatcttggtcgtatggtgagatcaag
aagcctgagactattaattatcggacttttaagccggagcgtgatggtcttttttgtgca
cgtatatttggcccgattaaggattatgaatgtttatgcggtaaatataaacgcatgaaa
tataagggcattatctgtgaaaaatgtggtgtagaggttactctttcgcgcgtacgccgt
gagcgtatgggacatattgagcttgcggcacctgtggctcatatttggttccttaaatcg
ttaccaggacgcatttctacacttttagatttgactttgaaggatattgagcgagttctt
tattttgaaaattatattgtaacagaaccagggttgacatctcttaagcttcatcagctt
ctttctgaagaagaatatatgcttgctattgatgagttcggggaagatcagtttactgct
atgattggtgctgaggctatttacgaacttttagcaagcatggagttagaaaaaatcgcg
aacgatttgcgtgttgaattatctgaaacaacttcggaattaaagcagaaaaaattaatc
aaacgacttaaaattgttgagaattttcttgaatctggcaataaaccagagtggatgatt
atgaaaacaattccagttattccaccggatttacgtccattggttccacttgatgggggg
cgttttgcgacgtcagacctgaacgatctttataggcgggttataaatcgtaataaccga
ttgaaacgacttattgagttgcgtgctcctggaattattgtgcgcaatgaaaagcgtatg
gtgcaggaagctgttgatgcattgtttgataatggtcggcgtgggcgtgtaattactgga
gcaaataagcgtccgctcaagtctctttcagatatgctcaagggtaaacaaggacgtttc
cgtcaaaacttacttgggaagcgtgttgattattctgggcgttctgttattgtgacaggt
cctgaattgaaattgcatcaatgtggtcttcccaaaaaaatggctttggaattatttaag
ccatttatttacgctcggcttgatgcgaaagggtattcgtcaactgtaaaacaggcaaag
aagcttgttgaaaaagagcatccggaggtttgggatattttggatgaagttattcgtgag
catcctgttttgctcaatcgtgcaccaacattgcaccgtttagggatccaggcttttgaa
cctatcttgattgaaggcaaagctatccagcttcatccgttggtgtgtaccgcttttaat
gcggattttgatggtgatcagatggcggttcacgttccactttctcttgaagcacagctt
gaagcccgtgttttgatgatgtcgaccaataatattcttcatccagccaatggtgcccca
attattgttccatcacaggatatggttcttggtctttactatctttcgatcgtgactgaa
aaagaaccgggagaggggatggcttttgccgatatgggtgagctccatcatgctttggaa
aataagattttaactcttcatacgaagattaaaggccgtgttaaaaatatgggtaaggat
ggaaaagaggtttctagactttacgacacaacacctggccgtttgattattggagaactt
ttgccgaaaaaccccaatatttcatttgatattgtcaataaagaaatgactaaaaagaat
atttctaaaatgattgatcaagtttatcggcactgtggacagaaagagatagttattttt
tgtgatcgtattatgcagcttggcttttcgtatgcttgtcgtgcggggatttcatttggc
aaggacgatatggttatccctgatagcaagtcgcgtttggttgcagaaacggaagctttg
gctaaagaatatgaacaacaatataatgatggcctgattacgcaaggtgaaaaatataac
aaggttgtagatgcgtggggtaaatgtacggatcgcgttgcggatgaaatgatgaaacgt
attcaagcagttgaatttgatccaaaaacaggacgtcagcgtccaatgaattcaatttat
atgatgtcacattctggtgcgcgtggttctgctaaccagatgaagcagttggcaggtatg
cgcggattaatggcaaagccatcaggtgaaattattgaaaccccaattatttcaaacttt
aaagaagggctaacagttaacgaatactttaattcgactcacggtgctcgaaaagggctt
gctgatactgcgctaaaaacagctaactctggttatttaacacggcgtcttgttgatgtt
gcccaggatgctattatttcagcggttgattgtggtactgcaaaggggctaactatgcag
ccgattgttgatgcagggcaaattgtcgcatctcttgggcaaagaattcttggtcgcaca
gcgcttgttgatattttgcatccagtctctggagaagttatccttgaaggtggagcaatg
attgaggaagctgatgttgctaagattgaagaagccggaattcagtcagttcaaattcgc
tctgctttaacatgtgaaacacgtcttggtgtttgtgctaaatgctacggtcgtgatttg
gcacgtgggacaccagttaatcagggggaggcagttggtgttattgctgctcaatccatt
ggtgaaccgggaactcagcttactatgcgaacctttcacttaggaggaacggcgcaagtt
gttgattcatctcatttagaggcttcttatgaaggcatcgtagagattcgtaatcgcaat
gtagttcgtaattctgaaggtcatttggtggtcatgggacgtaatatggctatccttata
aaagatgaggctggaaaagagcgtgtagtgcatcgtgttagttatggtgcgcatattttt
gttgatgatggtgacgtggttaaatgtggccaacgtatagcagaatgggatccctataca
cgtccgattttaactgaagttgaggggtatgtaggctttgaggatatgattgatggttta
tcagttactgaaacagccgatgaatctacaggtattaccaagcgtttggtgattgattgg
cgtgctaatccgcgtggcgctgagctaaaaccagccattattattcacgcagataaaaag
ggtaacaccattgctaaattgcataagggaggtgaagcccgttacatgatgtcagtggaa
actattctttctgttgagcctggttctcatgttaaagccggtgatgttattgctcgcttg
ccgatggaaagtgctaagacaaaagatattacaggtggtttaccacgtgtagccgagctt
tttgaagcgcggcgtccaaaggaccatgctatcattgctgaggtcagtggtacaatacga
tttgggcgtggttataaaaataaacgtcgtattatcattgaaccaaatgatgaaaagttc
gagtccgtagaatatttgattccaaaaggaaaattgtttcattttcaagaaggtgaccag
attgaaaaaggagattatatcctcgatggtaatccggcacctcatgatatcttagcaatt
aaaggtgttgaagctttagcatcttatcttgttaatgaaattcaagaagtttaccgtttg
caaggtgttttgattaatgacaagcatattgaagtgatcgttcgtcaaatgttgcaaaag
gttgaaattactgaatctggagattctggttatattccaggtgataatgttgaccgtatt
gaattagatgagatcaatgataatttgattgcagaagggaagagacctgcatctggtaat
cctatccttcttgggattacaaaagcttctcttcaaactccctcttttatttcggcagca
tcatttcaggaaacaacaagggtgcttacggaggcagcagtttctggtaaaattgatact
ttgcaaggtcttaaggagaatgttattgtcggtcgtcttattcctgcaggtacaggtggt
acgattgctcaaattcgtcgtatcgctgcagttcgtgatgatttaattgtagatgaacga
cgcaaatctagcaataatgagatagctaaggctatgttgacaaatatggtaactgaaaca
gtttctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system