KEGG   Burkholderia ambifaria AMMD: Bamb_0326
Entry
Bamb_0326         CDS       T00398                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
bam  Burkholderia ambifaria AMMD
Brite
KEGG Orthology (KO) [BR:bam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bam03016]
    Bamb_0326
Enzymes [BR:bam01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Bamb_0326
Transfer RNA biogenesis [BR:bam03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Bamb_0326
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: ABI85886
UniProt: Q0BIY7
Position
1:372275..372823
AA seq 182 aa
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAER
LPALASAHALPLQRVERIAWWPSLPRARLIVAELAADPACTALNADLSALLRELGVPADR
RPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLFESRLSHDGVSHVPIVSVPIG
RA
NT seq 549 nt   +upstreamnt  +downstreamnt
atgaacggcgaccggctccgtgcgttcgtcgcgctgatgcccgatacggcatcgcgcgac
gcgctgcacgcgctgccggtcacccgcggtgcacggcgcacgctgcccgcgcaactgcac
gtaacgcttgcgttcatcggcgcgatcgaacgtgcgcggtgcgacgcgctggccgagcgg
ttgccggcgctcgcgagcgcgcatgcgctgccgttgcagcgggtcgagcggatcgcgtgg
tggccgagcctgccgcgcgcgcggctgatcgtcgcggaactcgccgccgatcccgcctgt
acggcgctgaatgccgatttatccgcgctattgcgcgaactgggcgtgccggccgaccgc
cggccgttccggccgcatgtgacgctcgcgcggctgccgcgcgatgccgacggacagccc
gcgcacggcggcgcgaccggccggccggtcgcggtgcgcttcgtcgcgctgacgctgttc
gaaagccggctgtcgcacgacggtgtgtcgcatgtgccgatcgtgtcggtgccgatcggg
cgggcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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