KEGG   Burkholderia ambifaria AMMD: Bamb_1745
Entry
Bamb_1745         CDS       T00398                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
bam  Burkholderia ambifaria AMMD
Pathway
bam02024  Quorum sensing
bam03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bamb_1745
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Bamb_1745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bam03019]
    Bamb_1745
   03036 Chromosome and associated proteins [BR:bam03036]
    Bamb_1745
Messenger RNA biogenesis [BR:bam03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Bamb_1745
Chromosome and associated proteins [BR:bam03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Bamb_1745
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABI87301
UniProt: Q0BEX2
Position
1:complement(1930297..1930539)
AA seq 80 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEATTS
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgcaaagagcac
gttcccgtttcgatctatctcgtcaacggcatcaagctccaagggaacatcgaatcgttc
gaccagtacgtcgtgttgctccgtaatacggtgacccagatggtctacaagcacgccatc
tcgacggtcgtgccggcgcgcccggtgaatttccacccggacgcggaagcgaccacgtcc
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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