KEGG   Bacillus velezensis UCMB5036: BAM5036_0110
Entry
BAM5036_0110      CDS       T02480                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase (beta subunit)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
baml  Bacillus velezensis UCMB5036
Pathway
baml03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:baml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BAM5036_0110 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:baml03021]
    BAM5036_0110 (rpoB)
   03400 DNA repair and recombination proteins [BR:baml03400]
    BAM5036_0110 (rpoB)
Enzymes [BR:baml01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BAM5036_0110 (rpoB)
Transcription machinery [BR:baml03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BAM5036_0110 (rpoB)
DNA repair and recombination proteins [BR:baml03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BAM5036_0110 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: CCP20179
Position
122687..126268
AA seq 1193 aa
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMT
DTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERL
RPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EILAEKGQILDRRTLDKVLPYLENGIGFRKLYPNGGVVEDEVMLQSIKIYAPTDAEGEQT
INVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRF
GFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAKLSDDGSFLDDSIVARFRGEN
TVVARNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGT
GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQ
GTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVNDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGM
DVKILSGDEEEIEMRDLEDEEDAKQADGLALSGDEAPEETASPDVERDAVTKE
NT seq 3582 nt   +upstreamnt  +downstreamnt
ttgacaggtcaactagttcagtatggacgacaccgccagcgcagaagctatgctcgcatt
agcgaagtgttagaattaccaaatctcattgaaattcaaacctcttcttatcagtggttt
cttgatgagggtcttagagagatgtttcaagacatatcaccaattgaggatttcactggt
aacctctctctagagttcattgactacagtttaggagatcctaagtatcccgttgaagag
tcaaaagaacgtgatgtgacttactcagctccgctgagagtgaaggttcgtttaattaac
aaagaaactggagaggtaaaagaccaggatgtcttcatgggtgatttccctattatgaca
gataccggtacttttatcatcaacggtgcagaacgtgttatcgtatctcagcttgttcgg
tctccaagtgtatatttcagtggtaaagtagacaagaacggtaaaaaaggttttaccgcg
actgtcattccaaaccgtggcgcatggttagaatacgaaactgatgcgaaagatgttgtg
tatgtccgcattgatcgcacacgtaagttgccggttacggttcttttgcgtgctctcggc
ttcggttccgaccaagagattctcgatctcattggtgagaacgaatatctccgcaataca
ctggataaggacaacactgaaaacagtgacaaagcgcttcttgaaatctatgagcgcctt
cgtcccggagagccgcctacagtagaaaacgcaaaaagcttgctggattcccgtttcttc
gatccgaagcgatacgaccttgcgaatgtaggacgctataaaattaataaaaagcttcat
atcaagaaccgcctgtttaaccagcgccttgcagaaacactggtggatccggaaaccggt
gaaattctcgctgaaaaagggcagattcttgacagaagaacacttgataaagtactgcca
tacttagaaaatggaatcggcttcagaaaactttatcctaacggcggcgttgtcgaggat
gaagtgatgcttcaatccattaaaatctatgctcctaccgatgcagaaggagagcagacg
atcaatgtgatcggcaatgcttacatcgaagaggcgattaaaaacattacgcctgctgat
attatttcttctatcagctacttcttcaacctcctgcacggagtgggtgacactgatgat
atcgaccatctcggaaaccgccgtctgcgttctgtaggtgagctcctgcaaaaccaattc
cgtatcggtttaagccggatggaacgtgtcgttcgtgaaagaatgtctattcaagacacg
aatacaattacgccgcagcagctgattaacatcagacctgttattgcgtctattaaagag
ttcttcggaagctcacagctttctcaattcatggatcagacgaacccgcttgctgaattg
acgcacaaacgccgtctgtcagctctcggaccgggcggtttgacacgtgagcgcgcaggt
atggaagtacgtgacgttcactactctcactatggccgtatgtgtccgattgaaacgcct
gagggcccgaacatcggtttgatcaactcattgtcatcatttgcgaaagtaaaccgcttt
ggtttcattgagacgccataccgccgcgttgatcctgaaacaggaaaagtaacgcctaga
atcgactacctgactgctgatgaagaggataactatgtcgtagcccaagcgaatgctaag
ctgagcgatgacggttctttcttggatgacagcatcgtagcgcgtttcagaggggaaaac
accgttgtagcccgcaaccgagtggattacatggacgtatctcctaaacaggttgtatct
gctgcgacagcatgtattccgttcttggaaaacgatgactcgaaccgcgccctcatggga
gcgaacatgcagcgtcaggctgtgcctttgatgcagccggaagctccgatcgtcggaacg
ggtatggaatacgtatccggtaaagactccggtgcagccgttatttgtaaacaccctggt
atcgttgaacgggtggaagcgaaaaacgtatgggtgcgccgctatgaagaaattgacggc
caaaaagtaaaaggcaacctggataagtacagcttgctgaaatttgtccgctccaaccaa
ggtacgtgctacaatcagcgtccgatcgtcagtgtcggcgacgaagtagtcaaaggagaa
atccttgctgacggaccttcaatggagcttggtgaacttgctctcggccgcaacgtaatg
gtcggcttcatgacatgggatggttacaactatgaggatgccatcatcatgagtgaacgc
cttgtgaaagatgatgtatacacatctattcacattgaagaatatgaatcagaagcacgt
gatacaaagcttgggccggaagagatcacccgcgatattccaaacgtaggggaagatgcg
cttcgcaatcttgatgaccgcggaattatccgtatcggtgcggaagtcaacgacggagac
cttctcgtaggtaaagtaacgcctaaaggtgtaactgagcttacggctgaagaacgcctt
cttcatgcgatctttggagaaaaagcgcgtgaagtccgtgatacttctctccgtgtgcct
cacggcggcggcggaattatccacgacgtaaaagtcttcaaccgtgaagacggcgacgaa
cttcctccgggagtgaaccagcttgtacgcgtatatatcgttcagaaacgtaagatttct
gaaggtgataaaatggccggacgtcacggaaacaaaggggttatctcgaagattcttcct
gaagaagatatgccttaccttcctgacggcacgccgatcgatatcatgcttaacccgctg
ggtgtaccatcacgtatgaatatcggtcaggtattagaacttcacatgggtatggctgcc
cgctacctcggcattcacatcgcgtcacctgtatttgacggcgcgcgtgaagaagatgtg
tgggaaacacttgaagaagcaggcatgtcaagagacgctaaaacagttctttatgacggc
cgtacgggagaaccgttcgacaaccgtgtatctgtcggaatcatgtacatgatcaaactg
gcgcacatggttgatgataaacttcatgcccgttctacaggtccttactcacttgttacg
cagcagcctctcggcggtaaagcccaattcggcggacagcgtttcggtgagatggaggtt
tgggcgcttgaagcttacggcgcagcttacacgcttcaagaaatcctgactgtgaagtcc
gatgacgtggtcggacgtgtgaaaacatatgaagccatcgtcaaaggcgacaatgttcca
gagcctggtgttccggaatcattcaaagtattgatcaaagagcttcaaagcttaggtatg
gacgtaaaaatcctttcaggcgatgaagaagaaatagaaatgagagatctagaagacgag
gaagatgcgaaacaagctgacggccttgcattatcaggtgatgaagcgccggaagaaaca
gcatctccagacgttgaacgtgacgcagtaacgaaagaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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