KEGG   Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00040
Entry
BUMPUSDA_CDS00040 CDS       T03022                                 
Symbol
vacb
Name
(GenBank) Vacb
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bapu  Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bapu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BUMPUSDA_CDS00040 (vacb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bapu03019]
    BUMPUSDA_CDS00040 (vacb)
   03016 Transfer RNA biogenesis [BR:bapu03016]
    BUMPUSDA_CDS00040 (vacb)
Enzymes [BR:bapu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BUMPUSDA_CDS00040 (vacb)
Messenger RNA biogenesis [BR:bapu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BUMPUSDA_CDS00040 (vacb)
Transfer RNA biogenesis [BR:bapu03016]
 Prokaryotic type
  tRNA degradation factors
   BUMPUSDA_CDS00040 (vacb)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 HTH_12 Rho_RNA_bind DUF2196 Rrp44_S1
Other DBs
NCBI-ProteinID: AHG59841
UniProt: W0NZC7
Position
complement(598332..600506)
AA seq 724 aa
MVVDPYQKREAKKYKNSIPSREYISSWLKKCQDLISQKKIERKFGIIHQEEKKALRRRLR
AMERDGQIIYTKNRCYINPDNIKVVQGKVIGHKDGYGFLRIETSQDDLWLSSEQMKFCIH
GDVILAYIVNSDRKGRNSAKFLKILKANDSLIVGRYFSKNKIKFVVPDDTRFNFKILIFS
HRENISIGSIVVVKLKKHPTRNNKAEGLIVEVLGKEMGTNLAIDIALRKHSIPSFWSEDA
QKQLSQISHKINLCDFKNRIDMRHIPFFTIDDEDARDFDDAVFCKKKNNSEEGWNLLVAI
ADVSYYVKPNTALDKAALERGTSVYFPSLVVPMLPEKISTDLCSLNPFKERLCLICEMNL
SNTGELISYKHYEAVICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSYLQKVFNR
DNISKKGIYFENIVAKFVLDSNLRIKNIYQDIRNDAHKFIESCMILANIASASFVQKYNH
PVLFRNHNPPKKNNIVTFRSFLKELGLSLLGGEIPESIHYSNLLKNISNRPEYEMIQTIL
LRSMQQAVYSPNNCGHFGLSLYSYVHFTSPIRRYPDLVLHRVIKCLLSEKKSLSYKDCDS
CLYNIFEMKKIGQHCSMTERRADEANRDVIDWLKCDFMYKKIGDIFTGVISNVTSFGFFV
RLNQFFIEGLVRIASLEDDYYYFDALGLKLIGKSNKNTYCLGDILKVKVYSVNLNERKIE
LSLI
NT seq 2175 nt   +upstreamnt  +downstreamnt
atggtagtagatccctaccaaaaacgagaagctaaaaaatataaaaattctattccaagc
cgagaatacatctcatcttggcttaaaaaatgtcaagatttaattagtcaaaaaaaaata
gaaagaaaatttggtattattcatcaagaagaaaaaaaagcattacgtcgaagattaaga
gcaatggaacgagatggtcaaattatatatactaaaaatcgttgctatattaatcctgat
aatatcaaagtagtacaaggaaaagttataggacataaagatggttacggttttcttcga
atagaaacatcacaagatgacctatggctttcatcagaacaaatgaaattttgtattcac
ggtgatgttattttagcttatattgtaaattctgatagaaaaggacgtaattcagcaaaa
tttttaaaaatacttaaggcgaatgattctttaattgtaggtagatatttttcaaaaaat
aaaataaaatttgtagtgccagatgatactcgttttaatttcaagattcttatattttca
catagagaaaatatttcgataggatcgattgtagttgtaaagttaaaaaaacatcctaca
agaaacaataaagcagaaggattaatagtagaagttcttggaaaagaaatgggtactaat
ttagctatagatatagcattgcgaaaacattctattccatctttttggtccgaagatgct
caaaagcaattatctcaaattagtcataaaattaatttatgtgattttaaaaatcgtata
gatatgagacatattcctttttttactattgatgatgaagatgctcgtgattttgatgac
gctgttttttgtaaaaaaaaaaacaattcagaagaaggttggaatttattagtagcaatt
gcagatgttagttactatgttaaacccaatactgcattagataaagctgctttagaaaga
ggtacatctgtatattttccttcattagttgttcctatgttaccagaaaaaatttctaca
gatttatgttctttaaatccttttaaagaacgtctatgtttgatatgcgaaatgaattta
tctaatacaggagaattaattagctataaacattatgaagcagtaatatgttctcatgga
aggtttacatataatgaaatttttaaaatttggaatggcgatatttttttgcgttctaaa
tacaaaaaattcttgaaagatattgaaaatttatcatatttacagaaagtttttaataga
gataacatttctaaaaaaggtatctattttgaaaatatagtagctaaatttgttttagat
tctaatttaagaattaaaaatatttatcaagatattagaaatgatgcgcataaatttatt
gaatcatgtatgattttagcaaatatagcttctgcttcttttgttcaaaaatataatcat
cctgttttatttcgcaatcacaatcctcccaaaaaaaataatattgttacttttcgttcg
tttttaaaagaattaggtctgtcgttattaggaggagaaataccagaatctatacattat
tcaaatttattaaaaaatatttctaatcgtcctgaatatgaaatgattcaaacaatatta
ttacgttctatgcaacaagctgtttattcaccaaataattgtggtcattttggtttatct
ttatatagttatgttcattttacatcacctattagacgctatcctgatttagtactacat
agagtaataaaatgtttattatcagaaaagaaatcactttcttataaagattgtgattct
tgtttatataatatatttgaaatgaaaaaaataggacaacactgttccatgactgaaaga
cgtgcagatgaagcgaatcgagacgtaattgattggttgaaatgtgattttatgtataaa
aaaataggtgacatatttactggtgtgatttctaatgtcacttcgttcggattttttgtt
cgtttaaatcaattttttattgagggattagttcgtatcgcttctttagaagatgattat
tattattttgatgctttaggtcttaaattaatcggaaaatctaataaaaatacttattgt
cttggtgatattttaaaagtaaaagtttattctgttaatttaaatgaaagaaaaatagaa
ttatctttgatatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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