KEGG   Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00552
Entry
BUMPUSDA_CDS00552 CDS       T03022                                 
Symbol
rpoc
Name
(GenBank) Rpoc
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bapu  Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bapu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BUMPUSDA_CDS00552 (rpoc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bapu03021]
    BUMPUSDA_CDS00552 (rpoc)
   03400 DNA repair and recombination proteins [BR:bapu03400]
    BUMPUSDA_CDS00552 (rpoc)
Enzymes [BR:bapu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BUMPUSDA_CDS00552 (rpoc)
Transcription machinery [BR:bapu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BUMPUSDA_CDS00552 (rpoc)
DNA repair and recombination proteins [BR:bapu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BUMPUSDA_CDS00552 (rpoc)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 ApbA_C
Other DBs
NCBI-ProteinID: AHG60327
UniProt: W0P4E5
Position
complement(36780..40928)
AA seq 1382 aa
MIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKC
GVEVTQSKVRRERMGHIELSSPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIE
TGMTNLEKNQILTEEQYLDALEEFGDEFHATMGAEAIQFLLKDINLAQECDILRMELHDT
NSETKRKKLTKRIKLLESFIQSHNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL
YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA
DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEVR
GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ
LHPLVCAAYNADFDGDQMAVHVPLTLESQLEARALMMSTNNILSPANGEPIIVPSQDVVL
GLYYMTREKINGKGEGMLLNGSNEAEKVYRLGIAELHSLVRIRITEYKKNEDNSFTQITK
IIHTTIGRAILWTIVPKGLPFSIVNQTLGKKDISKMLNTCYRILGLKPTVFFADQIMYTG
FAYAARSGASVGIDDMVIPKKKANIIHEAEIEVAEIQEQFQSGLVTAGERYNKVIDIWAA
ANERVAKAMMENLSTESVINKKGEKQKQISFNSIFMMADSGARGSAAQIRQLAGMRGLMA
KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV
VTKDDCKTHEGILMTPLIEGGDVKEPLRERVLGRVTAENVIIPNTNNILIQRNTLLNEQW
CDLLEKNSIDNVKVRSVVNCDTDFGVCAYCYGRDLARGNLVNKGEAIGVIAAQSIGEPGT
QLTMRTFHIGGAASRAAAESSIEVKNQGIIHLNNAKFVTNSTGKIVITSRNVELNIIDNF
GRTKESYKVPYGAIMAKGNGEKVNSGETVAKWDPHTMPVITEVNGLVRFVDMIDGQSITR
QADELTGLSSIVILDTAERMSIGKDLRPALKIIDCDGKDVLISGTDMPAQYFLPGKAIVQ
LNDGVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKE
TKGKRRLVITPVDGSDSYEEMIPKWRQLNVFEGERVERGDVVSDGPESPHDILRLRGVQA
VTRYIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATIIKSGNSDFLNGEQVEFSRIKIS
NRVLEKKKKIPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKRDELRGLK
ENVIVGRLIPAGTGYAYHKERLNRRQKKHNNLTVNSSQISAEEASASLSELLNSTLTQND
YT
NT seq 4149 nt   +upstreamnt  +downstreamnt
atgattagatcttggtcatttggtgaagttaaaaaacctgaaacgattaattatcgtact
tttaaacccgaaagagatggactattttgtgctcgtatttttggtccagttaaagattat
gaatgtttatgtggtaaatataagagattaaaacaccgaggtgtgatttgtgaaaaatgt
ggtgttgaagtaactcaaagtaaagttagacgtgaacgaatgggtcatatagaactttct
tcacctacagctcacatttggtttttaaaatctttaccctcacgtataggtctattatta
gatatgcctttaagagatattgaaagagtattatattttgaatcttatgttgttatagaa
acaggaatgactaatcttgaaaaaaatcaaattttaactgaagaacaatatttagatgct
ttagaagaatttggtgatgaatttcatgcaacaatgggagcagaagcgattcaattttta
ttaaaagatattaatttagcacaagaatgcgatattctaagaatggaattgcatgatacc
aattctgagactaaaagaaaaaaactaacaaaaagaattaaattattagaatcttttatt
caatctcacaataaaccggaatggatgattcttaccgtcttaccagtactaccacctgat
cttaggccattagtaccattagatggaggaagatttgcaacatctgatttaaatgattta
taccgcagagttataaataggaataatcgtctgaaacgtttattagatttagcagctcca
gatataattgtaagaaacgaaaaaagaatgttacaagaagcagttgatgctttgctagat
aatggaagaagaggtcgtgcaattacaggatctaataaaagacctctaaaatcactagct
gatatgattaaaggaaaacaaggaagatttcggcaaaatcttttaggaaaacgtgtagat
tattcaggtcgttcagtaattactgtaggtccttatctccgtttacatcaatgtggatta
cctaaaaaaatggcattagaactttttaaaccatttatatatggaaaattagaagttcgt
ggtttagctactactattaaagcagcaaaaaaaatggtagaaagagaagaagcagtagta
tgggatattttagatgaagtaattcgagaacatccagttttattaaatcgtgcaccgact
ttacatagattaggtatacaagcatttgaacctgttctcatagaaggaaaagctattcaa
ctacatccattagtatgtgctgcttataatgcagactttgatggagatcaaatggctgtt
catgtcccattaactctcgaatctcaattagaagctagagcgttaatgatgtctactaat
aatattctttctccagctaatggagaaccaattattgtaccttctcaagatgtagtttta
ggattgtattatatgactcgtgaaaaaataaacgggaaaggtgaagggatgttattaaat
ggttcaaatgaagcagaaaaagtatatcgtttaggaattgcagaattgcattccttagtt
agaataagaatcacagaatataaaaaaaatgaagataatagctttactcaaataacaaaa
attattcacactactatagggcgagcaattttatggacaattgttccgaaaggtcttcct
ttcagtattgtaaatcaaactttaggtaaaaaagatatttctaaaatgcttaatacttgt
tatcgtattttaggacttaaaccgactgttttttttgctgatcaaattatgtatacagga
tttgcttatgctgcaagatcaggagcttcagttggtattgatgatatggttataccaaag
aaaaaagcaaatattattcacgaagcagaaattgaagttgctgaaatacaagaacaattc
caatctggactagtaacagctggcgaaagatataataaagtaattgatatttgggcagca
gctaatgaaagagtagctaaagctatgatggaaaacttatctacagaatctgttataaat
aaaaaaggagaaaaacaaaaacaaatctcttttaatagtatatttatgatggcagattct
ggagctcgtggttctgctgcacaaattcgtcaattagctgggatgagaggattaatggca
aaaccagacggttcgattattgaaacaccaattacagctaattttcgagaaggtttaaat
gtcttgcaatattttatttctactcatggcgcacgtaaaggattagcagatacagcactg
aaaacagctaattctgggtatttaacacgtcgcttagtagacgtggcacaagatttagtt
gtaacaaaagatgattgtaaaacacatgaaggaattttaatgactccgttaattgaagga
ggtgatgtaaaagaaccattacgtgaacgtgttttaggtcgtgttacagcagaaaatgtt
attattccaaatactaataatatattaattcaaagaaatacgttattaaatgaacaatgg
tgtgatcttttagaaaaaaattctatagataatgttaaagtaagatcagtagttaattgt
gatactgattttggtgtatgtgcttattgttacggacgagatttagcacgaggtaatcta
gttaataaaggagaagcaattggagttattgctgctcaatctataggtgaaccgggtact
caattaactatgagaacttttcatattggtggtgcagcatctagagcagcagcagaatct
agcattgaagtaaaaaatcaaggtattatacatctaaataatgctaagtttgttactaat
tctacaggtaaaatagtaattacttctagaaatgtagaactaaatataattgataatttt
ggtagaaccaaagaaagttataaagttccttatggtgctattatggctaaaggaaatggt
gaaaaagttaattcaggagaaactgtagcaaaatgggatccgcatacgatgcctgtaatt
actgaagtaaatggtttagtccgttttgtggatatgatagatggacaaagtattacgaga
caagctgatgaactaacaggattatcttctatagtaatattagatacagcagaaagaatg
tcaattggaaaagatttaagaccagcattaaaaataattgattgtgatggaaaagacgtt
ttaatttcaggtacagatatgcctgcacaatattttttacctggaaaagcaatcgttcaa
ttaaacgatggtgtacaaattagttcaggtgatactctagcaagagtaccacaagaatca
ggtggtactaaagatatcactggtggacttccaagagtagcagatttatttgaagctaga
cgcccaaaagaattagctattttagctgaaattagtggtattatatcatttggaaaagaa
actaaaggaaaaagaagattagttattactccagtagatggtagtgattcttatgaagaa
atgattccaaaatggagacagttaaatgtctttgaaggagaaagagttgaacgtggtgat
gtcgtatctgatggacctgaatcaccacatgatattcttcgtttaagaggagttcaagct
gtaactagatatattgttaatgaagtacaagaagtatatcgtttgcaaggtgtaaaaatt
aatgataaacatattgaagtaattataagacaaatgcttcgtaaagctactattattaaa
tcaggaaattctgattttttaaacggagaacaagttgaattttctcgaattaaaatttct
aatcgtgttttagagaaaaaaaagaaaatacctgcaactttttcaagagatttactaggt
attactaaagcttcacttgcaacagaatcttttatatctgcagcctcttttcaagaaaca
actagagtgttaactgaatctgcagtagcaggaaaaagagacgaattaagaggtttaaaa
gaaaatgttatcgttggacgtttgattcctgcaggtacaggatatgcatatcataaagaa
cgattaaaccgtcgtcaaaaaaaacataataatctcacagtaaacagttctcaaattagt
gctgaagaagcttctgctagtctttctgaattattaaattctactcttacacaaaatgat
tatacttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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