KEGG   Bifidobacterium asteroides: BAST_0819
Entry
BAST_0819         CDS       T02271                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
bast  Bifidobacterium asteroides
Pathway
bast03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bast00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BAST_0819
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bast03400]
    BAST_0819
DNA repair and recombination proteins [BR:bast03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BAST_0819
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BAST_0819
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_29 AAA_16 RsgA_GTPase nSTAND1 AAA_21 AAA_23 AAA_33 APS_kinase nSTAND3 AAA_22 DnaJ_CXXCXGXG T2SSE NACHT ATPase Viral_helicase1 cobW SLFN-g3_helicase BCA_ABC_TP_C FtsK_SpoIIIE Cytochrom_c3_2 Cytochrome_C7 Septin
Other DBs
NCBI-ProteinID: AFU71403
UniProt: K4INM6
Position
complement(1083870..1086848)
AA seq 992 aa
MKQQNKPKSTVDAAIENPRMIESKGSLVADLSMVPNDRKIVIQGARAHNLKNVNLSIPRN
RMVVFTGLSGSGKSSLAFDTLFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVS
IDQKTTNRNPRSTVGTITEVYDYLRLLFARTGIPHCPVCGAEVRAQSPQQIVDTLMSRPE
GTRFQLLAPIVKGRKGEFVETLELLRSDGYSRAIIDGDMHQLSDSIKLTKQKKHTIEVVV
DRLVIREGMRQRLTDSVETALRLAKGTVVADFVDLDAKDPERRQPFSEKRSCPNGHELEL
DEIEPRTFSFNAPYGACPACTGLGFNLEIDPELVVPDPEKSLKDGAVEPWSGTKSQQRFY
GHLLDGLAKEMGFSTSTPWKDLPEEVRHAVMYGHDFKVDVSYRNRWGRLREYTTGFEGVV
RTLMRRHDETDSQPMKQYYESYMREVPCQVCQGKRLKPEVLAVTVDGLSIAQVCDMAVSA
SLKWVEGLHMEGAQAKIAGEVLKEIRARLRFLNDVGLNYLTLSRAAATLSGGEAQRIRLA
TQIGSGLVGVMYVLDEPSIGLHQRDNDRLIKTLQRLRDLGNTLIVVEHDEDTIRQADWLV
DIGPGAGEHGGEVIFSGRSQDLVKASRSITADYIAGRRSIEVPKRRRKTSKTRQLTVVGA
RENNLKNLKVSFPLGVMTLVTGVSGSGKSTLVNSILYPVLADQLNNARIVPGKHTRVEGV
DQVRKVIHVDQNPIGRTPRSNPATYTGVWDKIRQLFAKTPEAQVRGYGPGRFSFNVKGGR
CETCHGDGTIKIEMNFLPDVYVQCETCHGKRYNRETLEVTYNGKTVSDVLDMPIEEAAHF
FKAYPSIARYLDTLVDVGLGYIRLGQPAPTLSGGESQRVKLATELQRRSDGKTVYILDEP
TTGLHFEDVRKLLKVLHGLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGTVVAQG
TPEQVAANPDSWTGKYLKPMLDPARVAKATRS
NT seq 2979 nt   +upstreamnt  +downstreamnt
gtgaagcagcagaacaagcctaagtcgacagtggacgcggccatcgagaacccgcgcatg
atcgaatccaaggggtccctggtggcggacctgtccatggtgcccaacgaccgcaaaatc
gtcatccagggcgcccgggcccacaacctcaagaacgtcaacctgtccataccccgcaac
cggatggtggtcttcaccggtctgtcaggctccggcaagtcctccctggcctttgacacc
ctcttcgccgagggtcagcgccgctatgtggagtccctctcagcctatgcccgccagttc
ctgggccagatggacaagcccgacgtggacttcatcgagggcctgagtcctgccgtctcc
atcgatcagaagaccaccaaccgcaacccccggtccaccgtgggcaccatcaccgaggtc
tacgactacctgcgtctgctcttcgccaggacaggcattccccactgcccggtctgcggg
gccgaggtgcgcgcccagtcgccgcagcagatcgtcgacaccctcatgtccaggcccgaa
gggacccgcttccagctgctggcccccatcgtcaagggccgcaagggcgagttcgtggag
acccttgagctcctgcgctccgacggctactccagggccatcatcgacggggacatgcac
cagctgtccgactccatcaagctgaccaagcagaagaagcacaccatcgaggtggtcgtg
gaccggctggtcatccgcgagggcatgcgccagcggctgaccgactctgtggagaccgcc
ctgcgactggccaaggggaccgtggtggccgacttcgtggatctggatgccaaggatccc
gagcgtcgccagcccttctccgagaagcggtcctgccccaatggccacgagctggagctg
gacgagatcgagcccaggaccttctccttcaacgccccctatggagcctgcccggcctgc
acaggcctgggattcaacctggagatcgaccccgagctggtggtgcccgacccggagaag
agcctcaaggacggggccgtggagccctggagcggcaccaagagccagcagcgcttctat
ggccacctgttggacggcctggccaaggagatgggcttctccacctcgaccccctggaag
gacctgccggaggaagtccgccacgccgtcatgtacgggcacgacttcaaggtggacgtc
tcctaccggaaccgctggggccgcctgcgcgagtacaccaccgggttcgaaggcgtggtc
cgcaccctgatgcgccgccacgacgagaccgactcgcagcccatgaagcagtactacgag
tcctacatgcgcgaggtgccctgccaggtctgccagggcaagcgtctgaagcccgaggtg
ctggccgtgaccgtggacggcctgtccatcgcccaggtctgcgacatggccgtgtccgcc
agtctgaaatgggttgagggcctgcacatggagggcgcccaggccaagatcgccggcgag
gtcctcaaggagatccgcgcccgtctgcgcttcctcaacgacgtgggcctgaactacctg
accctgtccagggctgcggcaaccctctccggaggcgaggcccagcgcatccgcctggcc
acccagatcggctcgggcctggtgggcgtcatgtacgtgctggacgagccctccatcggc
ctgcaccagcgggacaacgaccggctgatcaagaccctgcaacggctgcgcgacctgggc
aacaccctgattgtggtcgagcacgacgaggacaccatccgccaggccgactggctggtc
gacatcggcccgggggccggcgagcatggaggggaggtcatcttctccgggcgctcgcag
gacctggtcaaggcctcccgttcaatcaccgccgactacatcgccggtcgccgttccatc
gaagtacccaagcgccgccgcaagaccagcaagaccagacagctgaccgtggtgggggct
cgcgagaacaacctgaagaatctcaaggtctccttcccgctgggggtcatgaccctggtc
accggcgtctccggctccggcaagtccaccctggtcaactccatcctctatccggtgctt
gccgaccagctcaacaacgcccgcatcgtgcccggcaagcacacccgggtggagggcgtg
gaccaggtgcgcaaggtcatccacgtggaccagaaccccatcggccgcaccccgcgctcc
aacccggccacctacaccggcgtctgggacaagattcgccagctcttcgccaagaccccc
gaggcccaggtgcgcggctacggtccaggccgcttctccttcaacgtcaagggtggccgt
tgcgagacctgccacggtgacggaaccatcaagatcgagatgaacttcctgcccgatgtc
tacgtccagtgcgagacctgccatggcaagcgctacaacagggagaccctggaggtcacc
tacaacggcaagaccgtctcggacgtgctggacatgcccatcgaggaggccgcacacttc
ttcaaggcctatccctccatcgcccgctacctggacaccctggtggacgtgggtctgggc
tatatccgcctgggacagccggctcccaccctgtccggaggcgaatcccagcgggtcaag
ctggccaccgagctgcagcggcgctccgatggcaagaccgtatatatcctggacgagccc
accacgggtctgcacttcgaggatgtccgcaagctgctcaaggtcctgcacggcctggtc
gacaagggcaacacggtcatcgtcatagagcacaacctggatgtgatcaagaccgccgac
tggatcatcgatctgggacccgagggcggcgacggcggcggcaccgtggtggcccagggc
actcccgagcaggtggccgccaatccggacagctggaccggcaagtatctgaagcccatg
ctggatcccgccagggtagccaaggccactcgatcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (34)   

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