KEGG   Bordetella avium: BAV1108
Entry
BAV1108           CDS       T00695                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bav  Bordetella avium
Pathway
bav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BAV1108 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bav03019]
    BAV1108 (rne)
   03009 Ribosome biogenesis [BR:bav03009]
    BAV1108 (rne)
Enzymes [BR:bav01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BAV1108 (rne)
Messenger RNA biogenesis [BR:bav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BAV1108 (rne)
Ribosome biogenesis [BR:bav03009]
 Prokaryotic type
  rRNA processing factors
   BAV1108 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP
Other DBs
NCBI-ProteinID: CAJ48717
UniProt: Q2KUL9
Position
complement(1184285..1187332)
AA seq 1015 aa
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLAYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAA
AFMSVVMPDNVQRVKRYRDDTPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLEEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDVTWSPREQEVKARPEALVKGITPAQPAPVST
PAPAAKPAEGSGFGGLFKRLINWISGSSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGE
RHGSDRNRNRRETSEGQEQRRGARRQDETRTEQRNEQRAVPEQRAESRQNRTTENRNAEA
RNTETRDNRENLAAETRALAPETDGEGTPRNGRNRRGRGRGRREDGVTDAPMSEQETMVA
ALAETVASALPTMPAAPAATLVATTEPEAQPDTEASQGAEGENASDPERKRRRRRSRRGR
RSQEDGVTLNAEGQPIDGDDANDDQADEAAPAAVQVVSSHIATPVQTAPVETAPVVAAVP
AETAPAAAAAPVETAPVAAAAPVETTPVVAAAPVETAPAVAAAPAETAPVVAAAPVETAP
VAAAAPVETAPVLAAAPVETAPVAAAAPVETVPVAAAAPVETAPVAASPAAPIVISDNTL
NAVVQAAGLTWVQTDPARQVNAAPQADAAPVRLGRERKPVAQVSATPLVQVETQQ
NT seq 3048 nt   +upstreamnt  +downstreamnt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgtcgcaatcgttgat
gggcaaaagctcatcgacctcgatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaaaggcgtcatcacccgcatcgaacccggtctggaggcctgcttcgtcaactac
ggcgaagatcgtcacggttttctgcccttcaaagaagtggcccgcagctacttcaaagaa
ggcgtggatgtgcgcagcgcccgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgaaaaagaggaacgtggcaacaagggcgccgccctgaccaccttcatctcg
ctggctggccgttatctggtgctgatgcccaacaacccgcgcggcggcggcgtctcccga
cgcgtggaaggcgaagatcgccaagagctgcgtgacacgatggagcagctcgatgtgccg
caaggcatgagcatcatcgcccgcacagccggcatcggccgcaatgtcgatgagctccaa
tgggatcttgcctatctcctacagctctggacagccatcgatggcgccgcgcgtgataac
gccgctcccatcctgatttacctggagtccagcctggtcatccgggctatccgcgactat
ttttcgccggaaatcggtgaaatccttatcgataccgacgaaatcgctgatcaggccgcc
gcattcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
acgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctattcgcgtacg
gtacaactgccttcgggcggcgccgtggtcatcgaccacaccgaagcgctggtcgccgtc
gacgtgaactcggcccgctccacccggggcgccgacatcgaggaaaccgccctgcgcacc
aatctggaggcggccgacgaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtaatcgacttcatcgacatggaagacagcaagaatcaacgcgctgtcgaacaacgc
ctgcgcgatgccttgcactttgatcgcgctcgtgtgcagatgggcaagatttcccgcttt
ggcctgatggagttgtcgcgccaacgcctgcgccccgccctgaacgagggctcgcacatc
acctgcccgcgctgcaccggcaccggcgtcatccgcgatgcggaatccagcgccctacat
gtgctgcgcctgctggaagaagaggccatgaaggaaaacacggcggccgtgcacgctcag
gtgccggttgatgtcgccaccttcttgctgaacgaaaagcgcgccgacatcgccaagatg
gaagcccgcctgaaggtcaatctggtgctgatccccaacaagcacctcgaaacgccccac
caccatatcgagcgcctgcgccacgacgatccgcgcctggaagaaaccaagaccagcttc
gagctggccgaagcacctgccaccgatgtcacctggagcccgcgcgagcaggaagtcaag
gctcgccccgaggcactggtcaagggcatcaccccggcccagcccgccccggtatcgacc
cctgccccggcggccaaacctgccgagggttcgggatttggcggcctgttcaagcgcctg
atcaactggatctcgggcagcagcgaaaccaagccggctgaaaaatcggctgagcaaagc
aagcgccccagcggcaatcgcgccaagcgcgcccaagacggccaagagcgccgtggcgag
cgtcatggttcggaccgcaaccgcaatcgccgtgaaaccagcgaagggcaagagcaacgc
cgtggcgcacgccgccaggacgaaacacggacggaacagcgcaacgaacagcgcgctgtg
cccgagcagcgcgcagaatcgcgccaaaaccgcacgacggaaaatcgtaacgcggaagct
cgcaacaccgagacccgcgacaatcgggaaaacctcgccgccgaaacgcgcgcgctggct
cccgagacggatggcgaaggcacaccgcgtaacggccgcaatcgccgtggacgtggccgc
ggccgccgcgaagacggcgtcaccgacgcaccgatgagcgaacaggaaaccatggtggcc
gcactggccgaaaccgtggcctccgccctgcccaccatgccggccgctcccgccgcaaca
ctggtcgcaacgactgaacccgaagcccagcctgacaccgaggcatcgcaaggtgccgag
ggcgaaaacgccagcgatccggaacgcaagcgccgccgccgccgcagccgccgcggccgt
cgcagccaggaagacggcgtaacgctgaatgctgagggtcaacccatcgacggcgacgac
gctaatgacgaccaggctgatgaagcggctcccgccgccgtccaggttgtgagcagccac
atcgctaccccagttcaaaccgccccagtggaaacagctccggtcgtggctgccgtcccg
gcggaaacggctccggccgccgctgccgccccggtggaaacggccccggtcgccgctgcc
gcccccgtggaaacgactccggtcgtggctgccgcccccgtggaaacggctccggccgtc
gcagctgccccggcggaaacagctccggtcgtggctgccgccccggtggaaacggctccg
gtcgccgctgccgccccggtggaaacggctccggtcctcgctgccgccccggtggaaacg
gctccggtcgccgctgccgccccggtggaaacggttccggtcgccgctgccgccccggtg
gaaacggccccggtcgccgcaagcccggccgcccccattgtcatcagcgacaacacgctg
aacgccgtggtgcaagccgctggcctgacctgggtgcagaccgatccggcacggcaggtt
aacgcagcgcctcaagccgatgccgcgccggtgcgcctgggccgtgagcgcaagcctgta
gcccaagtatccgccacgccgctggtgcaagtcgaaacgcagcagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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