KEGG T03079: EP01

Bdellovibrio bacteriovorus 109J: EP01_08420

Entry

EP01_08420        CDS       T03079

Symbol

uvrA

Name

(GenBank) excinuclease ABC subunit A

K03701

excinuclease ABC subunit A

Organism

bbac Bdellovibrio bacteriovorus 109J

Pathway

bbac03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bbac00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EP01_08420 (uvrA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbac03400]
    EP01_08420 (uvrA)
DNA repair and recombination proteins [BR:bbac03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EP01_08420 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      EP01_08420 (uvrA)

SSDB

Motif

Pfam:

UvrA_inter ABC_tran SMC_N AAA_29 AAA_21 RsgA_GTPase DnaJ_CXXCXGXG AAA_16 AAA_25 AAA_15 nSTAND1 Viral_helicase1 PucR ScfRs HypA

Other DBs

NCBI-ProteinID:

AHZ84961

Position

complement(1747020..1749620)

AA seq 866 aa
MSHAEDGIVVKGAKEHNLKNVSVTIPRNKITVFTGLSGSGKSSLAFDTVYAEGQRRYVES
LSAYARNFLEQLKKPEVDSITGLSPAIAIDQKSVSTNPRSTVGTVTEIYDYLRLLFAKLG
IPECPTHHIPVSSQTPQQIIEEVFKKGVGTKFFVLAPMASGKKGEFLAEFQRWAKKGFVK
AKVDGKMIELDKATKLAKTKTHDIDLVVDQLILKDTLKLRLSESINTALSMANGRVIIET
LDGERTSYSLHSACPECGYSFPEIEPRLFSFNNPRGACPTCHGLGTIDLEEEEQFSDGEV
GGKKLDKVVYKYKGKKTSDDDDEEGEEMVLNDCPDCHGARLKNEALNIRLGGKTIAELSD
LGALELRDWIAKLQWKAKDQLIAEKIVKQILARLDYLIRVGTGYLSLSRPSRTLSGGEAQ
RIRLATQVGSSLIGCLYVMDEPSIGLHPRDHHRLLDIIGELKERGNTILLVEHDEDTIRY
ADFVVDLGPRAGVLGGEMMAQGTPDELAANPNSLTGKYLNGEMRIPIPKERRKGNGQFVR
LTGATGNNLQNVDLEIPLGTFTTVTGVSGSGKSTLIIDTLYKILAQHFYKALAQPSPYKK
IEGLDKIDKVIDINQRPIGRTPRSTPATYVGLFPMIRDLFANLPDSKLRGYEPGRFSFNV
KGGRCETCMGHGQIRMEMHFLSDVFVTCDTCLGRRYNRETLNIKYKSKSIADVLEMSVGE
ALEFFRNHTQIYRKLETLHRVGLDYMTLGQSSTTLSGGEAQRVKLSKELSRRGTGKTLYI
LDEPTTGLHFDDVRKLVELIQELADQGNTVLVIEHNMEVVKSSDHVIDLGPDGGKGGGQI
VAAGTPEKVAKVTASETGKFLKPLLK

NT seq 2601 nt +upstreamnt +downstreamnt
atgtcgcatgctgaagatggaatcgtagttaagggtgcaaaagagcataatctgaagaat
gtcagtgtgactattccgcgcaataagatcaccgtgtttacggggttgagtggcagcggg
aagtcgtcgttggcgtttgatacggtctatgctgagggtcagcgtcgttatgtggaaagt
ctttctgcttacgcgcgcaacttccttgaacagctgaaaaaaccggaggtcgattccatc
accgggctttctccggccattgcgattgatcagaaatctgtcagcaccaatccgcgttcc
actgtgggcacggtgaccgagatctacgattatcttcgtctgcttttcgccaagcttggg
atccccgagtgtcctactcaccacatcccggtcagcagccagaccccgcagcagattatt
gaagaggtctttaaaaaaggtgtcggcactaagttctttgttctggcgccgatggcgtcc
ggcaaaaaaggtgagttcctggccgaattccagcgctgggccaaaaaaggattcgtgaaa
gccaaagtcgacggcaagatgattgaactcgacaaggccaccaagcttgccaaaaccaaa
acacatgatatcgatctggtggtcgatcagctgattctgaaagacacgctgaagttgcgt
ctttcagaaagcatcaacaccgcgctgagcatggccaatggccgcgtgatcatcgaaact
ttggacggggagcgcaccagttattctttgcattcggcgtgtcctgaatgtggttacagc
ttccctgagattgaaccgcgtttgttcagtttcaacaacccgcgcggggcgtgcccgacg
tgccatgggttgggaactatcgaccttgaagaggaagaacagttctctgacggtgaagtc
ggcggcaagaaactggacaaagtcgtttacaagtacaaaggcaaaaaaacttcggatgat
gatgacgaagaaggcgaagaaatggttctgaacgactgcccggactgccacggcgctcgt
ttgaaaaatgaagctttgaatatccgtctgggtggaaaaaccatcgccgagttgtctgat
ttgggtgcgctggagctgcgtgactggattgccaaacttcagtggaaagccaaagatcag
ctgatcgctgaaaaaatcgtaaaacaaattctggcgcgtttggattatctgatccgcgtg
ggcaccggatatctttctttaagccgtccttcgcgcaccctgtccgggggcgaagcgcag
cgtattcgtctggcgactcaagtgggatcatctttaatcggctgtctgtacgtgatggat
gagccgagcatcggtttgcatccacgcgatcatcacagacttttggatatcatcggcgaa
ctaaaagagcgtgggaacaccatcttgttggtggagcacgacgaggacaccatccgttat
gcagacttcgtggtcgatctggggcctcgcgccggggtgctgggcggcgagatgatggcg
caagggactccggacgagctggcggccaatcccaattctttgaccggaaagtatctgaat
ggcgaaatgcgcattccgattccgaaagaacgccgcaaaggcaacgggcagtttgtgcgt
ttgaccggagctaccgggaacaacctgcagaacgtggatctggaaatccccttggggact
ttcacgacggtgacgggcgtgtcaggttctggaaaaagtacgctgatcatcgacacactt
tacaagattctggcacagcacttctataaggctttggcgcagccgtcgccgtataaaaaa
attgaaggcctggacaagatcgacaaggtcatcgacatcaatcaaagaccgattgggcgc
acgccacgctcgactccggcgacctatgtgggcttgttcccgatgattcgagatctgttt
gcgaatctgccggactccaagctgcgcggttatgaaccggggcgattcagttttaacgtc
aaaggcgggcgctgtgaaacctgcatgggccacggacagatccgcatggagatgcacttc
cttagcgacgtttttgtgacctgcgacacctgcctgggccgccgttacaaccgcgagact
ttgaatattaaatacaaatccaagtccatcgccgacgttctggaaatgagcgtgggggag
gccctggagttcttccgcaatcacacccagatctatcgcaagcttgagaccctgcaccgg
gtggggctggattacatgaccctggggcaaagctcgacaaccctgtcgggtggtgaagcc
cagcgcgtgaagctttctaaagagctgtctcgccgtggcaccggcaagacgctgtacatt
ttggatgagccgaccaccgggttgcattttgatgacgtccgtaagttggtggagctgatt
caggagctggccgatcaggggaacacagtcctggtgattgaacacaatatggaagtggtg
aagtcctcggatcacgtgatcgatctggggcccgatggcggtaagggcggcggccagatc
gtggcggccggaacacctgaaaaagtggcgaaggtcactgccagtgaaacaggcaaattc
ctgaagccattactaaaataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (22)   

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