KEGG   Bifidobacterium bifidum BGN4: BBB_0233
Entry
BBB_0233          CDS       T02135                                 
Symbol
rng
Name
(GenBank) ribonuclease G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bbf  Bifidobacterium bifidum BGN4
Pathway
bbf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBB_0233 (rng)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbf03019]
    BBB_0233 (rng)
   03009 Ribosome biogenesis [BR:bbf03009]
    BBB_0233 (rng)
Enzymes [BR:bbf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BBB_0233 (rng)
Messenger RNA biogenesis [BR:bbf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BBB_0233 (rng)
Ribosome biogenesis [BR:bbf03009]
 Prokaryotic type
  rRNA processing factors
   BBB_0233 (rng)
SSDB
Motif
Pfam: RNase_E_G DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AFL03829
UniProt: I3WG16
Position
282939..285821
AA seq 960 aa
MPSVNDNGFSRDETEEQQPTHADAAQSPDSADKTPAAPRRRRGGRRVVRGAGAAGAAVAL
KVEDHSAPLFAEPVVEQPLTRRRRSKAADESPETNEPETAASADSEKKDDARHAKADGKP
RSASRSSKATKRHDDDADQAEPRRTRVRRRTAMFSSREDASPAIPGEPSDDDLGVDTGTD
IIVRDDSADLSRALDVVSTLPQPAPRAHAMTSVLFQEPVLPVPGIVRDARDDDREDDDRD
SRGGGKSRRSRNGRVSRDGAQGDKDKSASSRRDIDGLSHIERVDSFDTDDSRSRDESGEA
DEPVRSSRRNRRLNAQERRAAAEVEQIEEDLELDGISYTPVDDEEPSEDSGTRSRRRRRS
RQNRADDSRGNGESDSSQSAAQQDEPAKPSSRRTRDEEEDDDSNVTRRRRRRRSRASDEQ
GDDEMTVRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLVEQDFLARREHV
NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG
QSRNGVLYAGEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG
RFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLES
LVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEY
LDTMAPDLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMT
TIDVNTGRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLV
LRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPT
VSADYDDPYALKGGDPFIKTNKHGRGTDVQVPQGSSPDIKAKLAQIAAAAVAANGTDEDE
NT seq 2883 nt   +upstreamnt  +downstreamnt
gtgcctagtgtgaacgataacggtttcagtcgtgacgaaaccgaagaacagcagcctacc
cacgccgatgcggcccagtcgcctgattcggccgataaaacgcctgcagcgccgcgtcgt
cgtcgcggtggccgccgcgtggttcgtggcgccggtgccgccggtgccgcggtcgcgctg
aaggtcgaggaccattccgctccgctgttcgcggaacccgtggtggagcagccccttacc
cgtcgtcgccgctcgaaggcggccgacgaatcgccggagaccaacgagccggagaccgcc
gcatcggccgattccgaaaagaaggatgatgcgcggcacgccaaggccgacggcaagcct
cggtccgcgtcgcgctcctcgaaagcgacgaagcgccatgacgatgacgccgatcaggcc
gaaccccggcgcacccgcgtgcgtcgtcgcaccgccatgttctcctcgcgcgaggacgct
tcgccggccattccgggcgagccgtcggatgacgacctcggcgtcgataccggcaccgat
atcatcgtccgcgatgattccgccgatctgtcccgcgccctggatgtcgttagcacgctg
ccgcaacctgcgccgcgcgctcacgcgatgacgtccgtgctgttccaggagccggtgctg
cccgtgccgggaatcgtgcgcgacgcgcgcgatgacgaccgcgaggatgacgaccgcgac
agccgcggtggtggcaagtcccgtcgctcgcgcaatggtcgtgtgtcacgtgacggtgcg
cagggggacaaggacaagagcgcttcctcccgtcgcgatatcgacggtctgagccacatc
gagcgcgtcgacagcttcgataccgacgacagccgcagccgtgacgaatccggcgaggcc
gacgagccggtgcgttcgtcgcgccgcaaccgtcgcctgaacgcgcaggagcgccgtgcg
gccgccgaagtggagcagatcgaggaggacctggagctcgacggcatctcctatacgccg
gtcgacgacgaggagccctccgaggattcgggcacgagatcccgtcgccgtcgccgctcc
cgtcagaaccgtgccgacgacagccgcggcaacggcgagtcggacagcagccagtccgcg
gcgcagcaggacgagccggccaagccgtcgtcccgccgcacacgcgacgaggaagaagac
gatgactccaacgtcacccgtcgccgtcgccgtcgccgctcccgcgcgtccgacgagcag
ggtgacgatgagatgaccgtgcgccgctcgcgcaagcagcagtacatcgacgagatcacc
gacgtcgagggctccacccgactggaggcgaagaagcagcgccgccgcgacaaccgccgc
gagcgcagccgccagagccagctggtcgagcaggacttcctcgcgcgccgcgagcacgtg
aaccgtctcatggtggtgcgcgaacgcggccatcacacgcagatctccgtcatcgaggac
aacgtgctcgtcgagcattacgtctccgacatccaggaggtcgccacggtcggcaacatc
tacctcggccgcgtgcagaacgtgctgccgagcatggaggcggcgttcgtcgacatcggc
cagtcccgcaacggcgtgctgtatgccggtgaggtgaactgggacgcgacccgcctcgaa
gggcagccgcgccgcatcgagctggcgttcaaatctggcgacccggtgctcgtgcaggtc
accaaggatccgatcggccacaagggcgctcgcctgacttcgcaggtcacgctcgccggg
cgttttctggtgctcgtgccgtccggcggcatgaccggcgtgagccgcaagctgagcgag
cgcgagcgttcgcgcctcaagggcattgtctcgaagatcgcgccgaaggacatgggcgtg
attatccgcaccgcggccgaaggtgccaaggaggaggcgatcgtcaaggatctggagagc
ctggtccgccagtgggagcgcatcaacgccaagcgcgaggagttctggcacggcaagcgg
ccgaagctgctgcagggcgagccggacgtcgcgatccgcgtggtgcgcgacatcttcaac
gacaatttcggcgagctaatcgtcgagggcgacaaggtgtacgagcgcatcgaggaatac
ctcgacacgatggcgcccgatctcaaggagaagttgtccaagtgggatccgtccgagcat
cagggcaaggacgtgttcgacaagtggcagatcgacgcgcagctcaggaagggcatggag
cgtcaggtgtacctgccttccggtgggtcgatcgtcattgaccgcaccgaggccatgacc
acgatcgacgtgaacaccggccggttcatcggccgtggcaagagccttgaggagacggtg
acgcgatgcaacctggaggcggccgaggagatcgcgcgccagctgcgtctgcgcgatatc
ggcggcatggtcatgatcgatttcgtcgacatggtgatgcccgccaaccgcgatctggtg
ctgcggcgtctggtcgaatgcctggcgcgtgaccgcaccaagcatcaggtggcggaggtc
acgtcgctgggtctggtgcagatgacgcgcaagcgcatcggccagggcctggtcgaagcg
ttctccgaggagtgcccgacctgccatggccgcgggttcatcctgcatgacgagccgacc
gtcagcgcggattacgacgatccgtatgcgctcaagggcggcgatccgttcatcaagacc
aacaagcacggccgcggtacggatgtgcaggtgccgcagggctcctcgccggatatcaag
gccaagctcgcgcagatcgccgccgcggcggtcgccgcgaacggcaccgacgaggatgag
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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