KEGG   Bifidobacterium bifidum BGN4: BBB_1358
Entry
BBB_1358          CDS       T02135                                 
Symbol
polC
Name
(GenBank) DNA polymerase III polC-type
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
bbf  Bifidobacterium bifidum BGN4
Pathway
bbf03030  DNA replication
bbf03430  Mismatch repair
bbf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bbf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBB_1358 (polC)
   03430 Mismatch repair
    BBB_1358 (polC)
   03440 Homologous recombination
    BBB_1358 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbf03032]
    BBB_1358 (polC)
   03400 DNA repair and recombination proteins [BR:bbf03400]
    BBB_1358 (polC)
Enzymes [BR:bbf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBB_1358 (polC)
DNA replication proteins [BR:bbf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BBB_1358 (polC)
DNA repair and recombination proteins [BR:bbf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BBB_1358 (polC)
SSDB
Motif
Pfam: RNase_T RNase_H_2 Rv2179c-like DEDDh_C DNA_pol_B_exo1
Other DBs
NCBI-ProteinID: AFL04950
UniProt: I3WJ87
Position
1625338..1625880
AA seq 180 aa
MLPDGTLPDDYVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQLVNPMRNLNPFIT
QLTGITPDMLEPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNR
IIDTLQMSRSMYPQYNRHRLVDLIQRFDIADVEEHRALSDAEQTQMCFEYMRDEQRRRDC
NT seq 543 nt   +upstreamnt  +downstreamnt
atgctgcccgacgggacactgcccgacgattatgtcgtactggatctggaaaccaccggt
gtcagctggtatcgggacaccatcatcgagttcggagcggtgaaggtcgtcgaccgcaag
cccgtcgacacctatcagcagttggtcaatccgatgcgcaacctcaatccgttcatcacg
cagctgaccggcatcacgccggacatgctcgaaccggcaccgacgctggacaccgtgctg
cccgacttcctgcgctggtgcggcgacgacgcgatgatcgggcacaacatcatgcagttc
gacatcaagttcatcgacctggcggcgcagcgcatcctgcaccatgcggtgccgaaccgc
atcatcgatacgttgcagatgagccggagcatgtacccgcagtacaaccgacaccggctg
gtcgacctgatccagcgtttcgacatcgccgacgtcgaggagcaccgcgcgctgtcggac
gccgagcagacgcagatgtgcttcgaatacatgcgcgacgagcagcgtcgcagagactgc
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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