KEGG   Bordetella bronchiseptica 253: BN112_0661
Entry
BN112_0661        CDS       T02344                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
bbh  Bordetella bronchiseptica 253
Pathway
bbh02020  Two-component system
bbh02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:bbh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BN112_0661 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BN112_0661 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbh03021]
    BN112_0661 (rpoN)
Transcription machinery [BR:bbh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BN112_0661 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR DUF3208
Other DBs
NCBI-ProteinID: CCJ52579
UniProt: A0A0C6P308
Position
675801..677249
AA seq 482 aa
MFPRPGASLSEENLSHVLQDLRLRQQTTLAPRLQQSIHLLQMSALEFTTTVQQALATNPF
LEDADETEAQDDAPAPPAASEPPATSEPPPEPPSYAGDYPTRSAAAQPGVASDAAAWVPA
TLSLHERLSQALGAYVLSERDRALAEFIVDGLDDDGYLRQELAQLAGVADFDPPPDASEW
QAALHLVQQLDAPGLAARDLPECLALQIRACSRLDPAVRDAALAIVAAHLPRLARSDYPG
MRRALRCSEPVLRQACGVIRGLDPKPGRRYAHEPPSYVVPDVVVSKQRQQWLVVPNRGAM
PHARLHQAYADLFRRARMDERSPMAQELQEARWLVRNVEQRYATIRRVAEAIVQRQQMFF
EFGQIALRPLMLREVADELEMHESTVSRATANKYMSTPRGVFEFRHFFSRELSTESGGTC
SAAAVRALIREYIDAEDPRMPLSDVTLAERLAGDGIVVARRTVSKYRLQLRLPAADARRQ
YY
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgttcccgcgcccaggcgcgtccctgtcggaggaaaacttgagccacgtcctgcaggat
ctgcggctgcgccagcaaaccacgctggcgccacgcctgcagcagtccattcatttgctg
caaatgtcggcgctggagttcaccacgacggtgcaacaggccctggcgaccaatccgttc
ctggaggacgccgacgagaccgaagcgcaggacgacgcgccggcgccgcccgcggcgtcc
gagccgcccgcgacatccgagccgccgcccgagccgccctcctatgccggcgactatccc
acgcgcagcgccgccgcccagcctggcgtggccagcgacgcggcggcctgggtgccggcc
accctgagcctgcacgaacgcctgtcgcaggcgctgggcgcctatgtgctgagcgaacgc
gaccgtgcgctggccgagttcatcgtggatggactggatgacgacggctacctgcggcag
gaattggcccaattggccggcgtcgccgatttcgacccgccgcccgacgccagcgaatgg
caggcggcgctgcacctggtccagcaactcgatgcgccgggcctggccgcgcgcgacctg
cccgaatgcctggccctgcagatccgcgcctgtagccggctcgatccggccgtgcgcgac
gccgccctggccatcgtcgccgcccacctgccgcgcctggcgcgcagcgattaccccggc
atgcggcgcgcgctgcgctgcagcgaaccggtgttgcgccaggcgtgcggggtgatccgc
ggcctcgaccccaagcccggccgccgctatgcgcacgaaccgcccagctacgtcgtgccg
gatgtggtggtcagcaaacagcgccagcaatggctggtggtgccgaatcggggcgccatg
ccgcatgcccggctgcaccaggcctatgccgacctgttccggcgcgcccgcatggacgag
cgcagcccgatggcgcaggaactgcaggaagcccgttggctggtgcgcaatgtcgagcaa
cgctacgccaccatccggcgcgtggccgaggccatcgtgcagcgccagcagatgttcttc
gagttcggccagatcgcgctgcggccgctgatgctgcgcgaggtggccgacgagctggag
atgcacgagtccacggtctcgcgcgccaccgccaacaagtacatgtcgacgccgcgcggg
gtgttcgagttccgccattttttctcgcgcgaactgagcaccgagtcgggcggcacgtgt
tcggccgcggccgtgcgcgcgctgatccgcgaatacatcgacgcggaagacccgcgcatg
cccttgtcggatgtgaccctggccgaacggctggccggcgacggcatcgtggtggcgcgc
cgcacggtgtccaagtaccggctgcagctgcgcctgcccgccgccgacgcgcgccgccag
tactactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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