KEGG   Bordetella bronchiseptica 253: BN112_1041
Entry
BN112_1041        CDS       T02344                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
bbh  Bordetella bronchiseptica 253
Pathway
bbh03030  DNA replication
bbh03410  Base excision repair
bbh03420  Nucleotide excision repair
bbh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bbh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN112_1041 (polA)
   03410 Base excision repair
    BN112_1041 (polA)
   03420 Nucleotide excision repair
    BN112_1041 (polA)
   03440 Homologous recombination
    BN112_1041 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbh03032]
    BN112_1041 (polA)
   03400 DNA repair and recombination proteins [BR:bbh03400]
    BN112_1041 (polA)
Enzymes [BR:bbh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BN112_1041 (polA)
DNA replication proteins [BR:bbh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN112_1041 (polA)
DNA repair and recombination proteins [BR:bbh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BN112_1041 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN112_1041 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc WD40_4
Other DBs
NCBI-ProteinID: CCJ52959
UniProt: A0A0C6P463
Position
complement(1119350..1122064)
AA seq 904 aa
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA
RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ
ASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNDKFGVPPERIVDYLMLVG
DTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLLT
VKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQERLPTGDARAVPQ
AVAPAELDYRIITDWAAFDAWMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGVAC
YIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAED
TMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDS
DFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEM
LALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPL
PQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRT
EAGRRVREAFIAEQGKLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGV
PLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDD
TRRLARDQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQ
DWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVATLRVPLVAEVGMGTNW
EQAH
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgaaaaaaaccttattgctggtagacggttcgagctacttgtaccgtgctttccacgcc
atgcccgacctgcgcaatgcgcagggcgaacccacgggtgcgctttatggcgtggtcaat
atgttgcgcaagctcgttcaggatcataaggcagagtatgccgtatgcgttttcgatgca
cgcggaaaaacattccgggacgatttgttccctgactacaagtcgcaccgcccgcccatg
cccgaagacctggcggcgcagatcgagccgatccacgaggccgtacgcgccctgggctgg
ccgctgctggccatcgaaggggtggaggcggacgacatcatcggcacgctggcgcggcag
gccagcgcgcaaggcatcgacaccatcgtctccacgggcgacaaggacctggcgcaactg
gtcgacccgcacgtcacgctggtcaacaccatgagcggcgaggtgctcgacgttgccggg
gtgaacgacaagttcggcgtgccgccggagcgcatcgtcgattacctgatgctggtcggc
gacacggtcgacaatgtgcccggcgtgaacaaggtcggacccaagacggccgtcaagtgg
ctggccgaacatggctccatcgacgcgctggtggccgccgccgacagcgtcaagggcgtg
gccggcaacaatctgcgcgaagccattccgaactttccgctcacgcgcacgctgctgacg
gtcaagtgcgactgcgacctgaccggccatgtgtcggattgggaagacctggcatggcgc
gagcgcgacgcggccacattgaccgcgctgttcgaccgctacggttttcgcacctggctg
cgcgaactgacgggcgaccaggagcgcctgcccacgggggacgcgcgcgccgtgccgcag
gccgtcgcgccggccgagctggactaccgcatcatcaccgactgggccgccttcgatgcc
tggatggcgctggtggaggacgcgccgctggtggcgctggatacggaaaccacgtcgctc
gacgagatgcaggcgcggctggtgggcctgtcgatggcggtcaagccgggcgtggcctgc
tatatcccggtggcgcaccgtggccccgaggcgggcgatcaattgcccagggacgaggtc
atcgcgcgcctgcgcggctggctggaggacgccgggcgcgccaagctgctgcaccatgcc
aaatacgatacccatgtcttcgccaacgaaggagtgagcctggcgggcgtggccgaggac
acgatgctgcaggcctatgtgctggagtcgcatcgcggcgtgggcctgaacgacctggcc
cagcggtttctcgggcgcagcggcgtgaactacgaagacctgtgcggcaagggcgccaag
cagatcggtttcgacgaggtggcggtcgccctggcggggcattattcctgcgaggattcc
gatttcacgctgcagttgcacgaggtgctgcgcccgcgcgtggccgaggacgaagggctg
gagcgcacctacctgctggagctgcaggtctcgcgcgtgctgaccgtggtcgagcgcaac
ggcgtgaaggtcgatgcccaggagctggggcgccagagccacaagctgggccaggaaatg
ctggcgctggagcagcgcgcctacgagctggccggccagccgttcaacctgaactctccc
aagcaattgggcgagatcctgttcggccgcatggggctgccggtcgtgcgcaagaccgcg
ggcggcgccccctcgaccgacgaggaagtgctgtccaagctggcgcaggactacccgctg
ccgcaggtgctgctggaataccggggcctgtccaagctgaagtccacctacaccgacaag
ctgccgcgcatgatcaacccggccaccggccgcgtgcatacgcactattcgcaggcggcg
gtgatcaccggccggctggcgtcgtcggatcccaacctgcagaacatcccggtgcgcacc
gaggccggccggcgcgtgcgcgaggccttcatcgccgagcagggcaagctgctgtcggcc
gactactcgcagatcgaactgcgcatcatggcgcacgtttcggatgacgccaacctgcag
cgtgccttcgcggcgggcgaggatatccaccgcgcgaccgcctccgaggtgttcggcgtg
ccgctggccgaggtcggcgccgagcagcgccgcgccgcgaaggcgatcaatttcggactg
atctacggcatgggcgtgttcgggctggcttccaacctgggcattacgcgcgatgccgcg
caagcctacatcgaccgctatttcacccgctatcccggcgtggcgcgctacatggacgac
acgcgccggctggcgcgcgaccagggctacgtcgagacggtattcggccgcaggctgcag
ctgccggacatccgcgccgcctccgggccgcgccgccagggcgccgagcgggccgccatc
aatgcgccgatgcagggtaccgccgccgacctgatcaagatggccatggtggcggtgcag
gactggctggacgccgagcgcctgcgcacccgcatgatcatgcaggtgcacgacgaactg
gtgctggaggtgcccgacgaggaactggcggcggtcgccgaagcgctgccgcggctgatg
tgcgacgtggccacgctgcgcgtgccgctggtggccgaggtgggcatgggcacgaactgg
gaacaggcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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