KEGG   Bordetella bronchiseptica MO149: BN115_3060
Entry
BN115_3060        CDS       T02295                                 
Symbol
vacB
Name
(GenBank) putative ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bbm  Bordetella bronchiseptica MO149
Pathway
bbm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN115_3060 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbm03019]
    BN115_3060 (vacB)
   03016 Transfer RNA biogenesis [BR:bbm03016]
    BN115_3060 (vacB)
Enzymes [BR:bbm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BN115_3060 (vacB)
Messenger RNA biogenesis [BR:bbm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BN115_3060 (vacB)
Transfer RNA biogenesis [BR:bbm03016]
 Prokaryotic type
  tRNA degradation factors
   BN115_3060 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 HTH_20 MarR_2 HTH_IclR Rrp44_S1
Other DBs
NCBI-ProteinID: CCJ59816
Position
complement(3318815..3321235)
AA seq 806 aa
MPADFDPDVPSREAILTALRSAGAPLSPAELAERMGVERPATLVGFERRLGAMERDGQLL
PNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLVKPS
GEYRGKPEGAIVEVIERRTNKLVGRFLHEHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQ
VVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRKFDVPVDFSEPANKQAARLPD
SVRKTDLKQRVDLRDVPLITIDGEDARDFDDAVYCEPVELGTGQRKRPAWRLLVAIADVS
NYVRPNDALDDDAYERGTSVYFPRRVIPMLPEVLSNGLCSLNPNVDRLVLVCDMVIPATG
AKAGTVTAYQFYNAVMHSHARTTYTSIWEALQQPGGPAAAALGAIMPHVRHLHELYQLLS
QQRRKRGAIDFDTVETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCAADFMSRSK
HPGLYRIHEGPTPERLQSLRDFLRTMGLSLGGGDEPTAKDYGEFLDSVRGRPDYPLLQTM
CLRSMQQAIYSPDNLGHFGLAYPAYTHFTSPIRRYPDLLTHRVIKALLEGQRYMPELEDQ
PIVIGRSQREHEHAVWEKLGLILSGSERRADEASRDVEAWLKCWFVKERVGEDFSGTVTG
VASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRGERTGMRYRLTDKVQVQVSRV
DLEARRIEFRLVKGTSFDALRKAAARGPDEGRRVKKAAAPKPAALKGQTAKQRRAEAKQA
SKPANTPKAAKSAGASAQKKPARARH
NT seq 2421 nt   +upstreamnt  +downstreamnt
gtgcctgccgacttcgaccccgatgtcccttcacgcgaagccattctgacggcgttgcgg
tcggccggggcgccgttgtcgccggccgaactggccgaacgcatgggcgtggaacggccc
gcgacgctggtcggcttcgagcgccggctcggggcgatggagcgcgacggtcaattgctt
cccaaccgcaagggtgtgctgctgctggccaccaagctggatttcgtggccggccgcgta
cagggccaccgcgatggcttcggcttcctggtgcgggatgacggcgggcccgatattttc
ctgtcgccgcgcgagatgctcaaagtgctgcacggcgaccgcgtcctggtcaagccgtcg
ggcgagtaccgcggcaagccggaaggcgccatcgtcgaggtcatcgagcggcgcaccaac
aaactggtgggccgcttcctgcacgaacatgggttgtccatcgtcgtgccggaagaccag
cgcatcaagcacgacattctcattccgcccagcgacaccaacggcgcccagcacgggcaa
gtggtgtcggtgcagatcatggagcagcccacccgccatacgcagccgctgggccgcgtg
tatgaggtgctgggcgagatcgacgatcccggcatggaaatcgaaatcgcggtgcgcaag
ttcgacgtgccggtcgatttttcggagcccgcgaacaagcaggccgcgcggctgccggac
tcggtgcgcaagaccgatctgaagcaacgcgtcgatctgcgcgacgtgccgctgatcacc
atcgacggcgaggacgcgcgcgatttcgacgacgcggtgtactgcgagccggtcgaactg
ggcaccggccagcgcaagcggccggcctggcgcctgctggtggccatcgccgacgtcagc
aactatgtgcggcccaacgacgcgctcgatgacgatgcctacgagcgcggcaccagcgtg
tatttcccgcgccgcgtgattccgatgctgcccgaggtgctgtccaacgggctgtgctcg
ctcaaccccaatgtcgaccgcctggtgctggtgtgcgacatggtgatcccggcgaccggc
gccaaggccggaacggtgacggcctaccagttctacaacgcggtgatgcattcgcatgcg
cgcaccacgtacaccagtatctgggaggcgctgcagcagccgggcggcccggctgccgca
gcgctgggcgccatcatgccgcatgtgcgccacctgcacgagctgtaccagctgctgtcg
cagcagcggcgcaagcgcggcgccatcgatttcgacaccgtcgagacgcgcatcgtctgc
aacgaactgggccgtatcgaacagatcgtgcccatggtgcgcaacgatgcccacaagctg
atcgaagaatgcatgctggcggccaacacgtgcgctgccgatttcatgtcgcgcagcaag
caccccggcctgtaccgcatccatgaaggccccacgcccgagcgcctgcagtccctgcgc
gatttcctgcgcaccatgggcctgtcgctgggcggcggcgacgagcccaccgccaaggac
tacggcgagttcctcgattcggtgcgcgggcgccccgactacccgctgctgcagaccatg
tgcctgcgctccatgcagcaggcgatctacagcccggacaatctcggccacttcgggctg
gcgtatcccgcctatacccatttcacttcgccgatccgccgttatcccgacctgctgacc
caccgcgtgatcaaggcgctgctcgaaggccagcgctacatgccggagctggaagaccag
cccatcgtcatcgggcgctcgcagcgcgagcacgaacacgccgtatgggagaagctgggg
ctgatcctgtcgggcagcgaacggcgcgccgacgaggcttcgcgcgatgtcgaagcctgg
ctgaagtgctggttcgtcaaggagcgcgtcggcgaggatttcagcgggacggtgacgggc
gtggccagcttcggcattttcgtgaccctggataccttgcacgtcgaggggctggtgcac
gtctcggaactgggcggggagtatttccagttcaacgatgccttgcacgaactgcgcggc
gagcgcaccggcatgcgttaccgcctgacggacaaggtgcaggtgcaggtgtcgcgcgtg
gacctggaagcgcgccgcatcgagttccgcctggtcaagggcaccagcttcgacgcgctg
cgcaaggccgccgcgcgcggtcccgacgaggggcgcagggtcaagaaggcggcggctccc
aagccggcggccctgaaggggcagaccgccaagcagcggcgcgccgaggccaagcaggcc
agcaagccggccaatacgcccaaggcggccaagagcgccggcgcgtcagcccagaaaaag
ccggcgcgcgcacgccattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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