KEGG   Bordetella bronchiseptica RB50: BB3268
Entry
BB3268            CDS       T00141                                 
Name
(GenBank) putative Ecf-type RNA polymerase sigma factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
bbr  Bordetella bronchiseptica RB50
Brite
KEGG Orthology (KO) [BR:bbr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbr03021]
    BB3268
Transcription machinery [BR:bbr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BB3268
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 HTH_23 HTH_30 HTH_10 HTH_AsnC-type GerE Sigma70_ECF HTH_11 HTH_29 HTH_Crp_2 Peptidase_M78 HTH_28 HTH_DeoR HTH_3 HTH_17 UPF0122
Other DBs
NCBI-ProteinID: CAE33760
UniProt: A0A0H3LQP0
Position
3498771..3499421
AA seq 216 aa
MTALAVAPASAACAIAAEAIHCAAMDTASAADEALMLAYGAEGDMDAFDALYARHRAGLY
RYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTTWLLQIAHNLLVDAHRRQPAPV
APEQAEAALASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEE
IAQVTGVSRETVKSRLRYATRRIREELSSESAPRSP
NT seq 651 nt   +upstreamnt  +downstreamnt
gtgacggccctggcagtcgcgccggcctcggcggcgtgcgcaatcgccgccgaggcgata
cactgcgccgccatggacaccgcgagcgccgccgacgaagccttgatgctggcctacggg
gccgaaggcgacatggacgccttcgacgccctgtacgcccgccaccgcgccggcctgtac
cgctacatcctgcgcagtgcgcgcaacgccgcccaggccgacgacatcttccaggaaacc
tggagccgcgtcatcgacgcccgggcccgctaccgcccccaggcgcgctttaccacctgg
ctgctgcagatcgcgcacaatctgctggtcgatgcccatcgccgccagcccgccccggtc
gccccggaacaggccgaggccgcgctggccagcgtgcccgccgccgaacacgagcagccc
gaggcgcggctatccgagttccagcagcgccgccggctgcaactggccatcgagcgcctg
ccggatgaacaaagactggcaatgctgctgcgactggagcacgatctggatgtggaagaa
attgcgcaagtcaccggtgtctctcgcgaaaccgtcaaatcgcgcctgcgctacgccacc
cggcgcatccgcgaggagctgagctccgagagcgcccccaggagcccctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

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