KEGG T04525: BBBR

Bifidobacterium breve DSM 20213 = JCM 1192: BBBR_0558

Entry

BBBR_0558         CDS       T04525

Name

(GenBank) excinuclease ATPase subunit

K03701

excinuclease ABC subunit A

Organism

bbrd Bifidobacterium breve DSM 20213 = JCM 1192

Pathway

bbrd03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bbrd00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BBBR_0558
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbrd03400]
    BBBR_0558
DNA repair and recombination proteins [BR:bbrd03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BBBR_0558
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BBBR_0558

SSDB

Motif

Pfam:

ABC_tran UvrA_DNA-bind AAA_16 nSTAND1 AAA_21 BCA_ABC_TP_C AAA_25 ATPase AAA_29 DnaJ_CXXCXGXG MobB RecA Lar_restr_allev Anti-TRAP DUF463 DUF4350 T2SSE RNase_E_G_Thio OrfB_Zn_ribbon

Other DBs

NCBI-ProteinID:

BAQ99596

Position

695629..698100

AA seq 823 aa
MRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALSTYTRRRL
TQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRPLFSRVASHVCPHCGA
RNESTLNVAAGLPITCAGCGKEFHAPGAESLAFNSAGACPTCSGTGIVREVNRAALVPDE
SKSIDDGAVLPWGSLMWDLMKQVCGAMGVRTNVPFSELTPEERDIVFNGPAIKKHILYKP
KKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVARFLKEGPCADCGGTRLSAAARAP
HVRGLNLAEASAMTLEAAVDWVRGVPESLPADMRPMATNICESFLDVARRLLDLGLGYLA
LDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVDGLLGVMRDLVADGN
SVVVVDHDVRVLKAAGHLIEMGPVAGAEGGHVIAQGTVDEVAANPSSRIAPFLADNVSAR
IRERVAEPQVFDLGRIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPA
LKAQAAGELLPEHVRELETAGISRANLIDATPIGANVRSTVATYADIHDELRRAFARCDA
AKTGGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDCGGSRYASEAGAIRR
AVKGESHLSLSLPQLMAMSVDQALAVTHDLKKVHARLTTLHDLGLGYLTLGEPTPALSGG
EAQRLKLASEMGKAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVASGATVVVIEHDLDV
IANADWIIDMGPGGGESGGRIVATGTPEQVAANPSSITGRYLG

NT seq 2472 nt +upstreamnt +downstreamnt
gtgcgcggggcgcgcgtgcataacctgaagaacattgacatcgacattccgctgggcgaa
ctggtgggcgtggccggcgtctccggttcgggcaagagctcgctggcgctcggcgtgctg
tatgcggaaggttcgcggcgctacttggaggcgctgtccacgtacacgcgacgccgcctg
acccaggccagtcgcgcccaagtggacgaagtactgcacgtgccggccgcgctggccctg
caccagcggcccacggtgcctggcatccgttcgacgttcggcacgatgaccgaactgctc
aacagtctgcggcccctgttctcccgcgtcgcctcgcacgtgtgcccgcattgcggggcg
cgcaacgagtcgacgctgaacgtggcggccggactgcccatcacctgtgctggctgtggc
aaggaattccacgcgcccggagccgaatcgctcgctttcaactcggccggcgcctgcccg
acctgctccggaaccggcattgtgcgcgaagtgaaccgtgcggccctggtgccggatgag
tcgaaaagtatcgacgacggtgcggtgctgccatggggctcgctcatgtgggaccttatg
aagcaggtgtgcggcgcgatgggcgtgcgcaccaacgtgccgttcagcgagctcacgccc
gaagagcgtgacatcgtattcaacgggccggccatcaaaaagcatattctttacaagccg
aagaaaggcgacgatttcgccgaactcgatttcacctacttcaacgccgtatacacggtg
gagaacgcgctcgccaaagccaaggacgagaaaggtctgaagcgcgtggctcgatttctc
aaggagggaccatgcgccgactgcggaggtacccgactgagcgccgcagcccgggccccg
catgtgcgcgggctgaacctggccgaagccagtgcgatgaccttggaagcggcggtggat
tgggtgcgcggcgtgccggaatctctgcccgccgacatgcggccgatggccaccaacatc
tgcgaatcattcctggacgtggcccgccgactgttggatttgggcctcggctatctggcg
cttgaccgcgccggtgccacgctttcgaccggtgaacgccagcgtgtgcagctcgcccgt
gccgtgcgcaaccgcaccactggcgtgctgtatgtgcttgacgagccatccatcgggctg
cacccctcgaatgtggacggactgctcggcgtgatgcgcgatctagtggcggacggcaat
tccgtggtggtcgtggaccatgacgtgcgcgtgctcaaagccgccggccatctcattgaa
atgggaccggttgccggcgccgaaggcgggcatgtgatcgcgcaaggcacggtggacgaa
gtggcggcgaatccaagtagtcgtattgcgccgttcttggccgataatgtgagcgcgcgc
atccgtgagcgcgtggcggaaccgcaggtgttcgaccttggccgtatccgcatgacaacc
agccagttgcatacggtcaagccgctggacgttgatattccgcgcggccggctcgtggcg
gtgacaggcgtctccggctccggtaaaaccacgatggtgctcgaatcgctgattcccgca
ctcaaagcgcaggcggcgggggagctgttgccggaacacgtgcgcgagcttgagaccgcg
ggcatcagtcgcgcgaatctcatcgacgccacgccgattggcgcaaacgtgcgctccacc
gtggccacctatgccgatattcacgacgaactgcgccgcgccttcgcccgatgcgatgcg
gccaagacgggcggctggaaggccggcgatttctcgtacaacactggacggctgcgttgc
cccacgtgcgacggcaccggttcgatctcactcgacgtgcagttcctgccggacgtgacc
atcgaatgcccggactgcggcggttcccggtatgcgtctgaagccggcgcgattcggcgt
gcggttaagggagaatctcacctttcactgagtctgccccaactcatggcaatgagcgtg
gatcaggcattggccgtgacccacgacctcaagaaggtccacgcacgtctgaccaccttg
catgatttgggtcttgggtatctgacactcggcgaaccgacgccggcgctttcgggcggc
gaagcccagcggttgaagctcgccagcgaaatgggcaaagcccaatcggacgcggtattc
gtgttcgatgagccgaccatcggtctccacccgctcgacgtgcgtgtgctgctgggcgtg
ttcgaccggcttgtggcgagcggcgcaacagtcgtggtcatcgaacatgaccttgacgtg
atcgccaatgcggactggatcatcgacatgggtccgggcggcggcgaaagcggcggacgc
atcgtcgccaccggaacgccggaacaggtcgcggccaacccaagcagcattactgggcgg
tatttagggtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (26)   

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