KEGG T03119: B689b

Bifidobacterium breve 689b: B689b_0264

Entry

B689b_0264        CDS       T03119

Name

(GenBank) Transcription termination factor rho

K03628

transcription termination factor Rho

Organism

bbrv Bifidobacterium breve 689b

Pathway

bbrv03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bbrv00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B689b_0264
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbrv03021]
    B689b_0264
   03019 Messenger RNA biogenesis [BR:bbrv03019]
    B689b_0264
Transcription machinery [BR:bbrv03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     B689b_0264
Messenger RNA biogenesis [BR:bbrv03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     B689b_0264

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA PIP5K NACHT SAP

Other DBs

NCBI-ProteinID:

AHJ22339

Position

346169..348118

AA seq 649 aa
MKLPELKELAKQMGLRGTSTMRKPELFATLQAARSGGEPPAGVTVRTPRADKAVTKAAKA
EPVVEETAALAEPQLDLSALAEEPKAAEPRRVRRKAADEATEEPRDARHRRDDERTGRKP
RKQADEAGDLLASLDLGETTAPERRRNRRDDTEAPLIRRVHDEDQPRRRRRPADSSDETV
RDLDDILATLPTQKHDEPADDGEQSEDREFSRRSRNRDRDRDNRNDRNDRRNRRMRGRDR
GENAGEDDRRFDDRENRNDRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSM
GQVKKYGLRKGDAVHGSIRAPRENDRRNQRQKFVPLQSIDSINGQSVEDALNRPQFSKLT
PLYPQERLKQETAPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAANNP
EVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDV
VVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSAL
VETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELITDPQELPII
YRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQANTGNAVNGN

NT seq 1950 nt +upstreamnt +downstreamnt
atgaagctgcctgagctcaaggagctcgccaagcaaatgggtctgcgaggcacgtctacc
atgcgcaagcccgaactgttcgccaccttgcaggccgcccgcagtggcggtgagccgccg
gctggcgtcactgtgcgcactcccagggccgacaaggccgtcaccaaggcagccaaggct
gagccggtcgtcgaagagaccgctgctctggcggaaccgcagcttgatctatccgcactt
gccgaagagcccaaggccgcggaaccccgtcgtgtgcgccgtaaggcagccgatgaggcc
actgaagaaccgcgcgatgcccgtcatcgccgcgatgatgaacgaaccggccgcaagccg
cgcaagcaggccgatgaggccggcgatctactcgcctccctcgatttgggcgagacaacc
gctcccgagcgccgccgcaaccgtcgtgatgacaccgaagctccgctcattcgccgtgtg
catgatgaggatcagccgcgtcgccgtcgccgtcctgcggacagcagcgacgagaccgtg
cgcgatttggatgacattctggccacgctgcccacgcagaagcacgacgaacctgccgac
gatggtgaacagagcgaagaccgcgagttcagccgtcgcagccgtaaccgtgaccgagat
cgcgacaaccgcaatgatcgcaatgaccgccgcaaccgccgtatgcgtggtcgtgaccgt
ggcgaaaacgccggcgaggacgatcgtcgtttcgatgatcgcgagaaccgcaatgaccgc
cgcgaggagccgcaggaagacctggtaccggtggccggtatcgtcgatgtgctcgattcc
tatgcgttcgtgcgtacgtccggctatctgcctggcccgaacgacgtgtatgtctccatg
ggccaggtcaagaagtatggcctgcgcaagggcgatgccgtgcacggttccattcgagcc
ccgcgcgagaacgatcgccgcaaccagcgtcagaagttcgtgccgctgcagtccattgac
tcgattaacggccagagcgtcgaggacgcactgaaccgtccgcagttctccaaactcacc
ccgctctacccgcaggagcgcctcaagcaggagaccgcgccgaacaagctcaccggccgc
atcatggatatcgtttccccgatcggcaagggccagcgtggtctgatcgtctccccgcct
aaggccggtaaaaccatcaccctgcagaacatcgccaatgccattgccgccaacaacccc
gaggttcacctgatggtggtgctcgtggacgagcgacctgaagaggtcaccgatatggag
cgcacggttcagggtgaggtcatctcctccactttcgatcgtcctgcttccgaccacacc
accgttgctgagctggccatcgaacgcgccaagcgtcttgtggagctcggccaggatgtc
gtagtgctgctcgattccatgacccgtctggcccgtgcctacaacatcgcggctccggct
tccggtcgtatcctgtccggtggtgtggatgcccaggcactctacccgccgaagaagttc
tttggtgcggcccgcaacatcgaaaacggcggctccctgaccatcatctcctcggcgctg
gtggaaaccggctccaagatggacgaggtgattttcgaggagttcaagggtaccggcaac
atggagcttcgcctctcccgagagctggcggacaagcgcttgttcccggccatcgacatc
aacgcctccggcacccgccgcgaagaactcatcaccgacccgcaggagctgccgattatc
tatcgtctgcgccgactgctgggtggcatggagcctgagcaggcctaccagaccctggtg
ccgcgtctcaagaagaccgccacgaaccgcgacttcctagccgctatcgtgcagcaggcc
aacaccggcaacgcggtcaacggcaactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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