KEGG   Bradyrhizobium sp. BTAi1: BBta_4204
Entry
BBta_4204         CDS       T00528                                 
Name
(GenBank) RNAse E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bbt  Bradyrhizobium sp. BTAi1
Pathway
bbt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBta_4204
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbt03019]
    BBta_4204
   03009 Ribosome biogenesis [BR:bbt03009]
    BBta_4204
Enzymes [BR:bbt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BBta_4204
Messenger RNA biogenesis [BR:bbt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BBta_4204
Ribosome biogenesis [BR:bbt03009]
 Prokaryotic type
  rRNA processing factors
   BBta_4204
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ABQ36261
RhizoBase: BBta_4204
UniProt: A5EJB7
Position
4414850..4418062
AA seq 1070 aa
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEESENRSNRRRNRHRSSRR
RGSGERVQSEIIEAADASQAPHGETHEGDHGAFEAPDAAYAQDNHPADDAGAETPAQTAG
FAEAPLEAPTHAAHDEGTHDAQPHHGSDAPAVADSEPAQGGTDLPVSPSAVAAAASSGEV
ASSEADDAAEAHDHDHHDHDHHDHDHDDHHDDDHHEDHDEHGHEDSADLSPVAEHDDDGE
VTIVPGDDNGVEPAVADHDDDDEDGEEIEEEVVESVGGDDVLEEVPERTFRPRRQYKIQE
VIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRL
KEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWETVRDMTLKSQAPTLVYEEG
SLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVRAVKQYRDGQPLFSRMGVE
SQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTALKTNMEAAEEVAR
QLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRI
RASVLESSTEPCAHCGGTGHVRSVSSVALQLLRSLEETLMKGATHNLVVRTRTEVALYVL
NHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHTLEAAKALLAAQASAPPLV
ADEVYDEDEPFDIETESEVETEETEGLSEEAAEASETERDGARRKRRRRRRGRGGNEARE
ATPEGATAAESLEVGTAAELPAEDAETEDEDSDEQPAFASGDQPSDQANGERRPRRRGRR
GGRRRRGGIDDGLAASISDDLAPASASEAEAAVADFDGNGVPHGDEPEAPVEAAPAAEVA
LAEQPVAPAAPAAIQPETQPAEPAKAEPEKTPRRSTVREKVSLFTEPKSTELKPDSAVVS
VNVAESTPTVAAAAPEAVTTEPTATEPAPEAAPAAPRKAGWWSRRFGGGQ
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgccgaacaagatgttgatcgatgctacccacccggaagagacccgggtcgttgtcgtc
cgcggcaaccgcgtcgaggaatttgattttgaaactgcccagcgcaagcaactccgcggc
aacatctacctcgccaaggtcacccgggtagagccgtcgctccaggcggccttcgttgaa
tatggcggcaatcgccacggcttcctggcgttcagcgaaatccaccctgattattaccag
atcccggtcgccgatcgtcaggcgctgatcgaggcggaagagcgcgcccaccgcgaggcc
gaggaagagagcgagaaccggtccaatcgccggcgcaaccggcaccgcagctcgcggcgc
cgcggcagcggcgagcgcgttcagagcgagatcatcgaggccgccgacgccagccaggcg
cctcacggcgagacgcatgagggcgatcacggcgcattcgaggcgccggacgccgcctac
gcgcaggacaaccaccccgccgatgatgcgggcgcggagacccctgcacagacagcaggc
ttcgccgaggcgccgcttgaggctccaacgcacgccgcccatgacgaagggacccacgac
gcgcagccgcatcacggttcggatgcgccggcggttgcggattccgagcccgcgcagggc
ggcaccgacctcccggtgtccccttctgcggtcgcagcggccgcgtcgagcggcgaggtt
gcctcgtccgaggccgacgacgccgccgaggcgcacgatcacgaccaccacgatcacgac
catcacgatcacgatcacgatgaccatcacgacgatgatcatcacgaggatcatgacgag
catgggcatgaggactccgccgatctctcgcccgtcgccgagcacgatgatgatggcgag
gtcacgatcgttccgggcgacgacaatggtgtcgagccggccgtcgcggatcacgacgac
gacgacgaggacggcgaggagatcgaggaagaggtcgtcgaatccgtcggcggcgacgac
gtgctcgaggaagtgcccgagcgcaccttccgtccgcgtcgccagtacaagatccaggag
gtcatcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgccgcgctgacgacctatctgtcgctcgccggccgctatgccgtgctgatgccgaac
accgcgcgtggcggcggcatcagccgcaagatcacctcggcgcaggaccgctcgcgcctg
aaggaagtggtgcaggacctcgacgtgcccgagggcatgggcgtcatcctgcgcaccgcc
ggcgccaaccgcaccaagcccgagatcaagcgcgacttcgaatatttgctgcggctgtgg
gaaacggtccgcgacatgaccttgaagtcgcaggcccccaccctcgtctacgaggaaggt
tcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgatgagatcctggtt
gccggcgaagccggctaccgtgaggcgcacgacttcatgaagatgctgatgccgaccaac
gtccgggcggtgaagcagtatcgcgatggccagccgctgttttcgcggatgggtgtcgag
agtcagctcgatgcgatgttctcgccgaccgtgcagctgcgttcgggcggctacatcgtg
atcaatcagaccgaggcgctcgtctcgatcgacgtgaactccggccgcgccacccgcgag
catcacatcgaggacaccgcgctcaagaccaatatggaagcagccgaggaagtggcgcgg
cagctccggctgcgcgacctcgccgggctgatcgtcatcgacttcatcgacatggacgag
aagcgcaacaaccgctccgtcgagcgcaagctgtcggactgtctgcggcaggatcgcgcg
cgcatccaggtcggccgcatctcgcatttcggcctgctggagatgtcgcgccagcgcatc
cgcgccagcgtgctggagagctcgaccgagccctgcgcgcattgcggcggcaccggccat
gtgcgctcggtgtcctcggtggcgctgcagctgttgcgcagcctcgaagagacgctgatg
aagggggcgacccacaacctcgtggtccgcacgcggaccgaggtggcgctctacgtgctc
aatcacaagcgcggccatctgcgcgacctcgagaacagcttcaaggtctcgctggccgtg
atcgccgatccgaacgtcagcggtcagcaatccttcatcatcgatcgcggtgagcaggtg
cacacgctcgaggccgccaaggcgctgctggctgcgcaggcctctgctccgcctttggtg
gccgacgaggtctatgacgaggacgagccgttcgacatcgaaacggaatccgaggtcgaa
accgaggaaaccgagggcctgtcggaagaggccgccgaggccagcgaaaccgagcgtgac
ggcgcccgccgcaagcggcgtcggcgccgccgcggccggggcggtaacgaggcgcgcgaa
gcgactcctgaaggagctacagcggcagagtccctcgaggtgggcaccgcggccgaactg
ccggccgaggatgccgagacagaggacgaggacagcgacgagcagccggccttcgcgtca
ggcgaccagccgagcgaccaggccaatggtgagcggcgcccgcggcggcgcggccgccgt
ggcggtcgccgtcggcgcggcggcatcgatgacggtctggccgcatcgatcagcgacgat
cttgcaccggcctctgcgtccgaggccgaggccgccgtcgccgatttcgacggcaacggc
gtcccccatggtgacgagccggaagccccggtcgaggctgcccccgcagcggaagtcgcc
ttggccgagcagcccgtcgcaccggcagctcctgctgcaatccagcccgagacgcagccg
gccgagcctgcgaaggccgagcccgagaagaccccgcgtcgctcgaccgtgcgcgagaag
gtcagcttgttcaccgagcccaaatccaccgagctcaagccggacagcgcggttgtctcg
gtcaacgttgccgagagcactcccaccgtggctgctgcggcgccggaggcggtaacgacc
gagccgaccgcgaccgagcccgctccggaggccgcgcccgcggccccccgcaaggccggc
tggtggtcgcgccgtttcggcggcggccaataa

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