KEGG   Bdellovibrio bacteriovorus W: BDW_10995
Entry
BDW_10995         CDS       T03036                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bbw  Bdellovibrio bacteriovorus W
Pathway
bbw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bbw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BDW_10995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbw03021]
    BDW_10995
   03400 DNA repair and recombination proteins [BR:bbw03400]
    BDW_10995
Enzymes [BR:bbw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BDW_10995
Transcription machinery [BR:bbw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BDW_10995
DNA repair and recombination proteins [BR:bbw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BDW_10995
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Apocytochr_F_C RnfC_N
Other DBs
NCBI-ProteinID: AHI06699
Position
complement(2313306..2317436)
AA seq 1376 aa
MRDLLNFFDKPKDPLSFDAVRVSLASPEMIREWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSL
PSRIGNLLNLSLKDVEKVLYCEAYVVNDPMDTTLEEGAVLSEEAYQAALNEFGPSFKAGM
GGEAVREMLRKIDTEYLSRKLRLEAKDVKSEAGMKKITKRLKVVEAFKGSINKPEWMMLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFVYNKLEEKGLASTIKQAKRLVDQETVEVWDILADVVKEHP
VLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQVEA
RVLMMSTNNILNPQSGKPVINPSQDIVLGLYWLTRVRPGAKGTGKVFASVDEAQYAYETG
LVDLQAACKVRVKGKLQETSVGRAILSDIVPKEVPFAEVNVTMTKKQIATLIDKTFRLAG
AKATCILADRIMELGFKYSTTAGMSIGINDMVIPAAKATMIADAERQVTEIQGQYDEGLI
TDGERYNKVVDIWAQTGDKIAKEGMNAIEKETFVVDGKEIVAPSFNPIFIMADSGARGSA
AQIRQLGGMRGLMAKPSGEIIETPITANFREGLTVIQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVVVSEVDCGVDDGLEITPVYEAGEIIQNIGDRILGRTSLYDVVDPMSN
TVVVPANQEISEDDVIKIEGLGIDKVMIRSALTCKSKRGVCVKCYGRDLARGATVNLGET
AGIIAAQSIGEPGTQLTMRTFHLGGAASRAVEQSVHTSRHDGTIKFDNVYAVTNRNGKLT
VMNRNGSVLVIDETGRERENFKLVYGAVLNFKEGDKVAKGQTVAEWDPYSNPIIAEISAK
IQYQDIEEGTTMQEQIDQVTGFATKVIMEAKSSDIKPTVYLVDDAGKVLNLPNREIPARY
LLPVGAQLLIGEGQEVHAGDVIAKMHREASKTKDITGGLPRVAELFEARKPKEAAIISEI
DGYVTFGKDVKGKQRVIVTPEVGEQKEYLIPKGKHVAVREGEYVRAGEALMDGPTNPHDI
LAVLGAKALSAYLVNEIQEVYRLQGVAINDKHIEVIVRQMLRKVEIKDAGDTRFLAGEQA
ERYAFEIENERVQQEGGQVATCNPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSR
TDHLRGLKENIIMGRLIPAGTGLTSYKRWKVSVAEDDDTGFVALPGMVSATQSHQG
NT seq 4131 nt   +upstreamnt  +downstreamnt
ttgagagacttgttgaattttttcgataaaccaaaagatccactttcgtttgatgctgta
cgtgtatcgttagcatctcctgaaatgattcgtgaatggtcatttggtgaagttaagaag
cctgaaacaatcaactaccgcacgttcaaaccagaacgtgacggtttgttctgtgctaaa
atctttggtccaatcaaagattatgagtgcttatgcggtaagtataaacgtatgaaatac
cgtggcgtcgtctgtgaaaagtgcggcgttgaagtaactcaaactaaagttcgtcgtgag
cgtttaggtcacatcgagcttgcaactccagttgcgcacatctggttcttgcgctctctt
ccttctcgtattggtaaccttttgaatctttctttgaaagacgttgagaaggttctttat
tgtgaagcttacgtagtgaacgatccaatggatacgacacttgaagaaggtgcagtactt
tctgaagaagcataccaagcagctcttaatgagttcggtccaagctttaaagctggaatg
ggcggtgaggctgttcgtgaaatgcttcgcaagatcgatacagaatatctttctcgtaaa
cttcgtttagaagcaaaagacgttaagtctgaagctggaatgaagaagatcacgaagcgt
ttaaaagttgtagaggctttcaaaggctctatcaataaaccagagtggatgatgctcgaa
gcacttccagttcttccgccagatcttcgtcctctagttccgcttgatggtggtcgtttt
gcgacttcagatctgaatgatctatatcgccgcgtgatcaaccgtaataaccgtttgaag
cgtcttcaggagctaaatgctccagatatcatcattcgcaacgaaaaacgtatgttgcaa
gaggcggttgatgctcttctagataacggtcgtcgtggtaagactttcactggtccaaat
aaacgtcctcttcgttcactttcagatatgttgaaaggtaaacagggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactctggtcgttcggtgatcgttgttggacctact
ttgaagcttcaccagtgcggtcttcctaagaagatggctctagagctattcaagccattt
gtttacaacaaacttgaagaaaaaggtcttgcatcaactattaagcaagctaaacgctta
gtagatcaagagacagttgaagtatgggatatccttgctgacgtggtgaaagagcatcca
gtgcttcttaaccgtgcgccaactcttcatagacttggtatccaagctttcgaacctgtt
ctacatgaaggtaaagcaattcagcttcaccctcttgtttgtacggcgttcaacgcggac
tttgacggtgaccaaatggcggttcacgttccactttcagttgaatctcaagtggaagca
cgtgtcttgatgatgtctacgaacaacatcctgaatccgcaatctggtaagccagttatc
aatccatcacaagatatcgtgttgggtctttactggttaactcgtgtacgtcctggagca
aaaggaacaggtaaagtatttgcgtctgttgatgaagctcaatacgcatacgaaacagga
cttgtggatcttcaagcggcttgtaaagtccgcgtaaaaggtaagctgcaagagacttct
gtaggtcgtgcgattctttctgacatcgttccaaaagaagttccgttcgcagaagtgaac
gtgacaatgacgaagaagcaaatcgcaactttgatcgataaaacattccgtcttgctggg
gcaaaggctacttgtatccttgctgacagaatcatggaattgggtttcaaatactcaaca
actgcaggtatgtcgattggtatcaacgacatggtgatcccggctgctaaggcaacgatg
attgctgatgctgaaagacaagtgactgagatccaaggtcagtacgacgagggtctaatc
acagacggtgaacgctacaataaggttgtggatatttgggctcaaacgggtgacaaaatt
gctaaagaaggtatgaacgcgattgaaaaagagacgttcgtagttgatggcaaagaaatt
gttgctccttcattcaacccgatcttcatcatggctgactctggagcccgtggttctgcg
gctcagattcgtcagttaggtggtatgcgtggtctgatggcgaaaccttctggtgagatc
atcgagactccaattactgcaaacttccgtgaaggtttgactgttattcagtactttatt
tctacgcacggtgctcgtaagggtcttgccgatacagcgttgaaaactgcgaactctggt
tacttgactcgtcgtttagttgacgttgctcaagacgtggttgtttctgaagtagattgc
ggcgttgatgatggtttggaaatcactccagtttacgaagctggtgagatcatccaaaat
atcggagatcgtattttaggtagaacgtctctttacgatgttgttgatccaatgtcgaac
actgttgttgttcctgcgaatcaagagatttcagaggacgatgttatcaagatcgaaggt
cttggtatcgacaaagtgatgattcgttcggctctaacttgtaaatcaaaacgtggcgtg
tgcgtgaagtgttacggacgtgaccttgcacgtggtgcgactgtgaacttaggtgagacc
gctggtatcatcgcagctcagtcaatcggtgagccgggtactcagttgacgatgagaacg
ttccacttaggtggtgcggcttctcgtgcggttgagcaatcagttcatacatctcgccat
gacggtactatcaagtttgataacgtttacgcagttactaaccgtaacggtaaactaaca
gtgatgaatcgtaacggttcagtacttgttatcgacgagactggccgtgagagagaaaat
ttcaaacttgtttacggtgcggtacttaactttaaagagggcgacaaagtcgctaagggc
caaactgtagctgagtgggatccgtattcgaatccaatcatcgcggaaatttctgcgaag
atccaatatcaggatatcgaagaaggaacgacaatgcaggagcagatcgaccaagtaact
ggttttgcgactaaagttattatggaagcgaaatcttctgacattaaaccaaccgtttac
ctagtagacgatgcgggtaaagtcttgaatcttcctaaccgtgagattccagcgagatac
ttacttccagtaggtgctcagttgttgatcggtgaaggacaagaggttcatgcgggtgac
gtaatcgcgaagatgcaccgtgaagcttcgaaaacgaaggatatcactgggggtctaccg
cgcgttgctgaattgtttgaagcacgtaaaccaaaagaagcagctatcatctctgagatc
gatggttatgtgactttcggtaaagacgtaaaagggaaacaacgtgttatcgttactcct
gaagtgggtgagcaaaaagaatacctcattccgaagggcaagcacgttgctgttagagaa
ggtgagtacgtaagagccggtgaggcattgatggatggtccaacaaatcctcacgacatt
ctggcggttctaggtgctaaagctctctctgcctaccttgttaatgaaatccaagaagtt
tacagacttcaaggtgttgctatcaatgacaagcatatcgaagtcattgttcgtcagatg
ctacgtaaagtagaaatcaaagacgctggagacacacgtttcctagcgggcgagcaagct
gagcgttatgcatttgaaattgagaacgagcgtgtacaacaagagggtggccaagttgca
acttgcaacccacttctattgggtatcacgaaagtttcattgagcactgacagctggatt
tcagcggcatctttccaagagacgactaaagttcttacggaagcagcgatcaattctcgt
acagaccatcttcgtggcctgaaagagaatattattatgggtcgcctaatccctgcagga
actggtttgacgtcttataaacgttggaaagtgtctgtggctgaggatgacgatactggt
tttgtggcattgccaggaatggtatctgcgactcaatcgcatcaagggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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