KEGG   Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0886
Entry
BBCT_0886         CDS       T03931                                 
Name
(GenBank) putative exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
bcat  Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03030  DNA replication
bcat03430  Mismatch repair
bcat03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bcat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBCT_0886
   03430 Mismatch repair
    BBCT_0886
   03440 Homologous recombination
    BBCT_0886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bcat03032]
    BBCT_0886
   03400 DNA repair and recombination proteins [BR:bcat03400]
    BBCT_0886
Enzymes [BR:bcat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBCT_0886
DNA replication proteins [BR:bcat03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BBCT_0886
DNA repair and recombination proteins [BR:bcat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BBCT_0886
SSDB
Motif
Pfam: RNase_T Rv2179c-like DNA_pol_A_exo1 DEDDh_C DUF2779
Other DBs
NCBI-ProteinID: BAR01854
Position
1052236..1052793
AA seq 185 aa
MDPLSGRFTDFIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDEFDQLINPFEHIPSRI
TGLTGIDDGMLLGKPDVREVMDEFARWCSDTAVVMAHNASFDMSFLDNAVQLAYADRDAR
FAHHFVDTLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRDEAE
LLGML
NT seq 558 nt   +upstreamnt  +downstreamnt
ttggatccgttgtccggacgattcacagatttcatcgtgatcgacacggaaacaaccgga
ttgagcgtgcgcaaaggcgccaggctcattgaaatcggcgcggtcaaaattcacaacgat
gagctggtcgacgaattcgaccagctcatcaacccgttcgaacacatcccatcaagaatc
actggtttgacgggaatcgacgatggcatgctgctcggcaaaccggatgtgcgtgaagtc
atggatgagtttgcacgctggtgttcggacacggccgtggtcatggcgcacaatgcgtcc
ttcgacatgtcgttcctcgacaatgctgtacagctcgcttacgcggatcgggacgcgcgc
ttcgcacaccatttcgtcgacacattggatctcagccgtcggctgcatccggaaaaacga
acccacaaggtttccaccctcatcgtcgactaccacatcgccgacatggaggagcaccgc
gcattgtccgacgccaagcaggagtggatgctgtatcgcgccatgcgtgacgaggccgag
ctgctcggcatgctctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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