KEGG   Burkholderia cenocepacia DDS 22E-1: DM39_2762
Entry
DM39_2762         CDS       T03308                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
bcen  Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM39_2762
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcen03019]
    DM39_2762
Messenger RNA biogenesis [BR:bcen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DM39_2762
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Ric8 P-loop_SecA Sacchrp_dh_NADP DegT_DnrJ_EryC1 CARD_2
Other DBs
NCBI-ProteinID: AIO31281
UniProt: A0A088U201
Position
1:3005741..3007177
AA seq 478 aa
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPRGGGGGGGGNRAPRAGGSAQPAAK
RDGSPQPKAAKPRASGGNGGNGNNGGRPAAGGNGARAANGNAAHPNRNRSSRSGQRGH
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggccatccctgccgtcctcggcggcggcgac
ctgctcgccggcgcgcaaaccggcacgggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcatcgcggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aaatacctgaagctgcgctcgacggtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagacgatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctggcgaagctgccgccg
cgccgccagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgattcgccggcgctgatcgaggtcgcacgccgcaacacgactgccgagagc
gtcgcgcagaagatccatccggtcgatcgcgatcgcaagcgcgagttgctcacgcacctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagctgaccaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtcggagttcaagagcagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgaaaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcaggcttcgagcccgat
ccgaatgcgaagccggaaccgatccagcagcgtcgcggccagcagccgcgcggcggtggt
ggcggcggcggcggcaatcgcgcgccgcgcgccggcggctcagcgcagccggccgcgaag
cgcgacggcagcccgcagccgaaggcagcgaagccgcgtgcatccggcggcaatggcggc
aacggcaacaatggcggccggcccgcggccggcggcaacggcgcacgcgcggcgaacggc
aacgccgcgcacccgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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