KEGG   Burkholderia cenocepacia DWS 37E-2: DM40_2427
Entry
DM40_2427         CDS       T03488                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bcew  Burkholderia cenocepacia DWS 37E-2
Pathway
bcew03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcew00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM40_2427 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bcew03021]
    DM40_2427 (rho)
   03019 Messenger RNA biogenesis [BR:bcew03019]
    DM40_2427 (rho)
Transcription machinery [BR:bcew03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     DM40_2427 (rho)
Messenger RNA biogenesis [BR:bcew03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DM40_2427 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB ATPase_2 AAA_22 AAA_25
Other DBs
NCBI-ProteinID: AIO40674
UniProt: A0A071MBD8
Position
1:2632177..2633439
AA seq 420 aa
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcatttatccgagctcaagtctctgcacgtgtccgaactgatcgaaatggccaatggc
ctggagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgttcgccattctcaaa
aagcgcgccaagacgggagagacgatcttcggcgacggcacgctcgaagtgctgccggac
ggcttcggcttcctgcgctcgcccgaaatgtcgtacctcgccagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacttgcacaccggcgacacgatcgaaggtgag
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtcaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcat
ccgaacaagccgctgtcgctcgaacgcgaaatgcgcggcgaagaaaacgtcaccggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctggtcgcgtcgccg
aagtcgggcaagaccgtgatgctccagcacatcgcgcatgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgagcgccctgaagaagtgaccgaaatgcag
cgctcggtcgcaggcgaagtgatcgcatcgacgttcgacgaaccggccacgcgtcacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgtctcgtcgaaatgaagcacgacgtc
gtgattctgctcgactcgatcacgcgtctcgcccgtgcgtacaacaccgtgatccctgca
tcgggcaaggtgctgacgggtggtgtcgacgcgaacgcgctgcaacgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggttcgctgacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtgtatccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaagaaatgctgatcaagcccgagatcctgcaaaagatc
tgggtgctgcgcaagttcatccacgacatggatgaagtcgaggcgatggaattcctgctc
gacaaaatccgccagacgaagagcaactcagagttcttcgacctgatgcgccgcggcggc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system