KEGG   Baumannia cicadellinicola Hc (Homalodisca coagulata): BCI_0440
Entry
BCI_0440          CDS       T00349                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bci  Baumannia cicadellinicola Hc (Homalodisca coagulata)
Pathway
bci03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BCI_0440 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bci03019]
    BCI_0440 (rne)
   03009 Ribosome biogenesis [BR:bci03009]
    BCI_0440 (rne)
Enzymes [BR:bci01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BCI_0440 (rne)
Messenger RNA biogenesis [BR:bci03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BCI_0440 (rne)
Ribosome biogenesis [BR:bci03009]
 Prokaryotic type
  rRNA processing factors
   BCI_0440 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ABF14279
UniProt: Q1LT33
Position
452880..454649
AA seq 589 aa
MMKRMLINATQHEELRIALVDGQKLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVD
HGAERHGFLPFKEISREYFPPNSTNKLNIKDVLREGQEIIVQIDKEERGNKGAALTTFIS
LAGSYLVLMPNNPRAGGISRRIEGESRNELKEALSLLELPEGMGLIIRTAGIGKSAEALQ
WDLSFRLQHWQAIKKIANSRPAPFLIHQESNVLVRAFRDYLRPDIGEILIDNSNILDLAK
KHITLLGRPDFTSKIKFYNGETPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTA
IDINSARSTRGSDIEETAFNTNLEAVEEIARQLRLRDLAGLIVIDFIDMTPIRHQRLVEN
CLRDAVRQDRARIQIGRISRFGLLELSRQRLSSSLRDSSHHLCPRCGGTGTIRDNESLSL
SILRVIEEETLKDNTHEVHAIVPVPIASYLLNEKRDAINAIEKRQGGVRAVIVPNDQMQT
PHYIVLRRRKGEKATTLSYLLPKLYCTAKMNLAEDIPNERKSSDKPYLAKQDKLQLPHQN
TKLIIATMSDVVIQIISSLRSLASIEFLFEPKYNEILSHLIKGIFYFAY
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgatgaaaagaatgttaatcaatgcaactcaacatgaagagttgcgtatcgctttagta
gatggtcaaaaattatatgacctagatattgaaagtttaggacatgaacagaaaaaagct
aatatatataagggtattattactagaattgaacaaagtcttgaagctgcttttgttgat
catggtgctgagcgtcatggtttcttaccatttaaggaaatttctcgggaatattttcca
cctaactctactaataagctaaatattaaagacgtactacgtgaaggacaagaaattatt
gtacaaatagataaagaagaacgaggtaataaaggcgctgcacttactacttttattagc
ttagcaggaagttatcttgttttgatgccgaataaccctcgtgcaggaggaatttcgcgt
cgtattgaaggagaatctaggaatgagcttaaggaagcactatcgttactagaattacca
gaaggtatgggtctaattattcgtacagcagggataggtaagtcagctgaagcattacag
tgggatttatcatttcgtcttcagcattggcaggctatcaaaaaaatagcgaacagtcgt
ccagcaccatttttaattcatcaggagagtaatgttcttgtacgtgcttttcgtgattat
cttcggcctgatattggtgaaattctcatagataactctaacattttggatttagctaaa
aaacatattaccttgttaggacgaccagactttactagcaaaattaagttctataatggg
gaaactccactttttagccactaccagatagaatcacagattgagtctgcttttcagcgt
gaagtacgtttaccttctggtggttcaatagttattgatactactgaggcactaacggca
atagatattaattcagcacgttcaacacgcggtagtgatatcgaagaaactgcctttaat
actaacctagaagcagtagaagaaatagctcgtcaattacgtttgcgagatctagctggt
ttaatagttatagactttattgatatgacaccgatacgtcatcaacgcttagtagaaaat
tgcttacgtgatgctgtacgtcaagatagagctcgtattcagataggacgaatatcccgt
tttggtctattagaactttctcgccaacgtctaagttcatcgttacgtgattctagtcat
catttatgcccacgttgcggtggtacaggtacgattcgtgataacgaatcactatcactt
tctatcttacgtgtaattgaagaagaaaccctaaaagacaacacgcatgaagtacatgca
atagtacctgtacccattgcttcttatttacttaatgaaaaacgtgatgctattaatgct
attgaaaagcgccaaggtggagtgcgtgcagttattgtgcctaatgatcaaatgcaaact
ccacattatattgttctacgaagacgtaagggtgaaaaagccaccacactcagttattta
ttaccaaaactatactgtacagctaaaatgaacttagctgaagatatccctaatgaacga
aaaagttccgataagccttatctagctaaacaagataagttacaattaccacaccaaaat
actaagctcattattgcaactatgagtgatgtggttattcaaattatatctagtttacgg
tctttagctagtatcgaatttcttttcgaaccaaaatataacgaaatactatctcatcta
ataaaaggcatattttattttgcatactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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