KEGG   Alkalihalobacillus clausii: ABC1087
Entry
ABC1087           CDS       T00228                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bcl  Alkalihalobacillus clausii
Pathway
bcl03030  DNA replication
bcl03410  Base excision repair
bcl03420  Nucleotide excision repair
bcl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABC1087 (ligA)
   03410 Base excision repair
    ABC1087 (ligA)
   03420 Nucleotide excision repair
    ABC1087 (ligA)
   03430 Mismatch repair
    ABC1087 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bcl03032]
    ABC1087 (ligA)
   03400 DNA repair and recombination proteins [BR:bcl03400]
    ABC1087 (ligA)
Enzymes [BR:bcl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ABC1087 (ligA)
DNA replication proteins [BR:bcl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ABC1087 (ligA)
DNA repair and recombination proteins [BR:bcl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ABC1087 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABC1087 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ABC1087 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ABC1087 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT BRCT_2 HHH_3 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: BAD63625
UniProt: Q5WJ30
Position
1178888..1180903
AA seq 671 aa
MDKHQAEKRLKELRLLLEDYGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSP
SVRIGGPPAPSFKKVAHRVPMMSLSNAFNEEDLRAFDRRVRQAVGEHVSYVCELKFDGLA
VSLTYENGKLVRGATRGDGTIGEDITNNLRTVPAIPLRLKQPYSIEVRGEAYMPKASFER
LNEAKEQAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLM
FLKELGFKVNEEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTA
KSPRWATAFKFPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLI
REKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGEVAL
RCLNPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQLIADVADLYLLEREELLQL
ERMGEKSVDNLLAAIEASKENSLERLLFGLGIRFVGAKAAKTLAYEFETMERLQEATFEQ
LLAVNEIGEKMADSIVSYFQKPEVATLLEKLANAGVNMTYTGPKKAAIAEEAGVFAGKTV
VLTGKLSQWTRKEAQEKIEALGGTVTGSVSKKTDLVVAGEDAGSKQKKAESIGIEIWTEE
QFTQAVEQSEQ
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggacaagcaccaagcagaaaaacggcttaaagagctgcgcctcctattggaggactat
ggctaccattattatgtgctcgatacgcctaaagtccccgactcggagtatgaccgcctc
atgaatgaattgcttcaacttgaggcggactatccagatttggttacggaagactcacca
agcgtacgcattggcgggccgccggctccgtcctttaaaaaagtggcccaccgagtgccg
atgatgagcttgtccaatgccttcaatgaggaagatttgcgcgcgttcgaccgccgcgtc
cgccaagcggtaggcgagcacgtctcctacgtgtgcgaattaaaatttgatggccttgct
gtatcgcttacgtatgaaaatggaaagctcgtccgcggtgcgactcgtggggacggaacg
attggcgaagatataacaaacaatttgagaaccgttcctgccattcctttgcggttaaaa
cagccttattcgatcgaggtgcgcggcgaagcatatatgccaaaagcatcattcgaacgt
ttaaacgaagcaaaagaacaggcgggagaagaaaaattcgccaaccctcgtaatgcggca
gctggctccttgcgccagctcgacccgaaaattgccgccaaacggaatttatcgttattt
gcctactcgattggcgaagtcgaaggcaaaaacgtgcaaacccattttgacagcttgatg
tttttgaaagaactcggctttaaagtaaacgaagaagcagcagaatgcgaaacgattgag
gacgtcattgcctatacagaaaaatggagcgaacggcgccatgagcttccatatgaaatt
gatggagtcgtcgtcaaagtcaattccttggccgaccatgaaaaactaggctttacagca
aagagtccccggtgggcaacggcatttaagtttcctgccgaagaagtgctgacagtttta
cgcgatattgaactaaatgttggtcgaacaggcgtagtaacgcctactgccctattagat
cccgtgcttgttgcgggaacaaccgtaaggcgggcttccttgcataatgaagatttgatc
cgcgaaaaagacgtcaagcttggcgatacggtcattgtcaaaaaagcaggtgacatcatc
ccagaagtcgttggcgttttgacggataagcgaacaggcgaggaagttgactttcatatg
ccgacagagtgtcctgagtgccatagcgttttggaacgcttggaaggggaagtggcgttg
cgctgtttaaacccgaagtgcccagcgcaaattcgtgaagggcttatccactttgtatca
cgaaatgcgatgaacatcgacggccttggcgaaaaagtgatcagccaattgtttttgcat
caattgatcgctgatgtggctgatttatatttgttggaacgtgaggaattgctccagctg
gaacggatgggagaaaaatctgtcgacaatttgttggcggcgattgaagcctcaaaagaa
aattcgcttgaacggctgttgtttgggctcggcatccggtttgtcggtgcgaaggcagcg
aaaacgctagcatatgagtttgagactatggaacggctccaagaggcaacgtttgaacaa
ttgcttgccgtcaatgagattggcgagaaaatggcagactcgattgtctcctattttcaa
aagccagaggtggccacgttgttagaaaaactagccaatgctggcgtcaacatgacttac
acaggaccgaaaaaagcagcgattgccgaagaagctggggtattcgccggcaaaacggtt
gtgctgaccggaaaactgtcccagtggacgcggaaagaagcacaggaaaaaatcgaagcg
ctcggcggcacagtgacgggcagtgttagcaaaaaaaccgatttggttgtcgctggggaa
gatgcgggctctaaacaaaaaaaagcggaaagcattggaattgagatttggacagaggaa
cagtttacacaagcggttgaacaaagcgaacagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (32)   

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