KEGG   Bdellovibrio sp. NC01: DOE51_15100
Entry
DOE51_15100       CDS       T06360                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bdc  Bdellovibrio sp. NC01
Pathway
bdc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DOE51_15100 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdc03021]
    DOE51_15100 (rpoB)
   03400 DNA repair and recombination proteins [BR:bdc03400]
    DOE51_15100 (rpoB)
Enzymes [BR:bdc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DOE51_15100 (rpoB)
Transcription machinery [BR:bdc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DOE51_15100 (rpoB)
DNA repair and recombination proteins [BR:bdc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DOE51_15100 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: QDK39815
UniProt: A0A514X214
Position
complement(3131754..3135890)
AA seq 1378 aa
MDIPNLIELQKSSYEAFIQKDMDPDRRGDAGLNGVFKSVFPITDFNNTASLEFVSYTLEP
AKYDVDECRQRGMTFAAPIKVTLRLIVFDVDEETEARSIRDVKEQEVYLGEIPLMTANGS
FIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIYSARVIPYRGSWLDAEFDQKDLIH
VRIDRRRKFPVTILLKALGYNAEQLLEYFYDLDEVYVKGGKLYRKLDIERMSGQRALTDI
LDPKGGEPLVKAGRRITRAIVKKIKDLNITELEVEPNDLDGKVLAKPLIDESTGEIIADA
NAELNSAIIRRAIEAGIDRFFMIFFDGLTVGPYLRNTLLVDKVSNKDESLVEIYKRLRPG
EPPTLEAATTFFGRLFFDPETYDLSEVGRIKINHRFGISMEECPPSHRTLTHKDILSTIK
TLIDLKNGRGVIDDIDHLGNRRVRSVGELLENQYRIGLVRMERAIRERMSLQDVETMMPH
DLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRDRAGFEVRDV
HPTHYGRICPIETPEGPNIGLIASLATYARINNYGFIETPYRKVEQGQVSKDINYLSALE
EAGHHIAPAARDEAGNKSIQTATTITRRDGEYEIVDKDKVALMDVSPSQLVSIAASLIPF
LEHDDANRALMGSNMQRQAVPLLRSRAPLVGTGVERLVARDSGTSVVVQNDGIVEEVDAS
RIVIRRFAKGGELGANVDIYNLTKYQRTNQNTCFNQKPIVTVGDKVSKGDIVADGPSTEL
GELALGQNILVAFTPWQGYNFEDSILISERLLKDDVYTSIHIEEFECVARDTKLGKEEIT
RDIANVGEEALKDLDSSGIIRIGAEVRPGFILVGKVTPKGETQLSPEEKLLRAIFGEKAG
DVRDTSLRAPSGVYGTVIDAQVYSREGADRDERLASIIEEKKRKLEKDLAVEQNVIKNNA
ISKLRDILVGKVTTGVLLNEDGSQKLLNKGQNITIADIETIPFELLNYIPLEQDLEFQVN
KIIDNARNQLDAVKLVFNEKIDRLRKGDELPPGVIKMVKVYVAIKRKMQVGDKFAGRHGN
KGVVSKVLPLEDMPYLADGTPVDMVLNPLGVPSRMNIGQILEVHLGWAAHNLGKQLGEHL
QKWNAENARKEMKDIFNDSDISAKLDGADEASLKSMVTRMKNGIHVGTPVFDGARESDVK
GLLDKAQVPTSGKSILFDGRTGEPFTNPVTVGIMYMLKLHHLVEEKIHARSIGPYSLVSQ
QPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVKSDDVAGRTRMYESIVKGENILE
PGLPESFNVLVKELQSLALNVELMESDILRDQDEDLGEEVIEGGDLTGGSAPTEPGQH
NT seq 4137 nt   +upstreamnt  +downstreamnt
attgatattcctaacttgattgaattgcagaagtcttcttacgaagctttcattcaaaaa
gatatggatccagatcgtcgtggcgatgctggtctcaatggcgttttcaaatctgtgttc
ccgatcacagacttcaacaacactgcaagtcttgagttcgtgagctacacacttgagcca
gcaaaatacgacgtagacgagtgccgtcaacgtggtatgactttcgctgctccgatcaaa
gtaactcttcgtttgatcgtatttgatgttgatgaagaaacagaagcacgttcaatccgc
gacgtgaaagaacaagaagtttacttgggcgaaatcccattgatgactgcgaatggttct
ttcatcatcaacggtactgagcgcgttgttgtatctcagttgcatcgttctccaggtgta
ttcttcgaccacgatggtggtaagaacaatgcttctggtaaattgatttactctgcacgt
gtgattccttaccgtggttcttggttggatgctgaattcgatcaaaaagatttgatccac
gttcgtatcgatcgccgtcgtaaattcccagtgacaatcttgttgaaagcattgggttac
aacgcagaacaattgcttgaatacttctacgaccttgatgaagtttacgtaaaaggcgga
aagctttaccgtaagcttgatatcgagcgtatgtcaggtcaaagagcattgactgatatc
cttgatccaaaaggtggcgagcctcttgtaaaagcaggtcgtcgtatcactcgtgcgatc
gttaagaaaattaaagatcttaacatcacagagcttgaagttgaaccaaacgaccttgat
ggtaaagttttggcgaaaccacttatcgacgaatcaactggtgagatcatcgctgatgcg
aatgctgagttgaattctgcaatcatccgccgtgctatcgaagctggtatcgatcgtttc
ttcatgatcttcttcgacggtttgactgttggaccttaccttcgcaacacattgttggtt
gataaagtttctaacaaagacgaatcacttgttgagatctacaaacgccttcgtcctggt
gagcctccaactttggaagctgctacgacattcttcggtcgtttgttcttcgatccagaa
acttacgatttgtctgaagttggtcgtatcaagatcaatcacagattcggcatctctatg
gaagagtgcccaccttcacacagaacactgactcataaagatatcttgagcactatcaaa
actctgatcgacttgaaaaatggtcgcggtgttatcgacgatatcgatcacttgggtaac
cgtcgtgttcgttcagtaggtgagttgcttgaaaaccaataccgcatcggtttggttcgt
atggagcgcgcgattcgtgaacgtatgtctcttcaagatgttgagacaatgatgcctcac
gatctagtgaacgctaaacctgtgaacgcagttgttaaagaattcttcggttcttctcaa
ttgtcacaattcatggaccaaacaaatccattgtctgagatcactcacaaacgtcgtttg
tcagctcttggccctggtggtttgactcgtgaccgtgcaggtttcgaagtacgtgacgta
catcctacgcactacggtcgtatctgcccaatcgaaactccagagggtccaaacatcggt
ttgatcgcctctcttgcgacttacgctcgtatcaacaactacggtttcatcgagacgccg
tatcgtaaagttgagcaaggtcaagtttcgaaagacatcaactacttgtcagcattggaa
gaagctggtcaccacatcgctcctgcggctcgtgacgaagctggaaacaaatctatccaa
acggctactactatcactcgtcgtgatggtgagtatgaaatcgtggataaagataaagtt
gctttgatggacgtttctccatcgcaattggtttctatcgctgcttcattgattccattc
ctagagcacgatgacgccaaccgtgccttgatgggatcgaacatgcaacgtcaagcggtt
ccattgttgcgttctcgcgcaccacttgttggtacaggcgtagagcgtttggttgctcgt
gactctggtacatctgtcgttgttcaaaacgatggtatcgttgaagaagtcgatgcatct
cgtatcgttatccgccgttttgcaaaaggtggcgaacttggtgcgaacgtagacatctac
aatttgactaagtaccaacgtacgaaccaaaacacatgcttcaatcaaaaaccaatcgta
acagttggtgataaagtatcgaaaggcgacatcgttgccgacggtccttcaactgagctt
ggtgagttggctctaggtcaaaacatcctagtagcgttcactccttggcaaggttacaac
tttgaggactctatcttgatttctgaacgtctattgaaagatgacgtttacacatctatc
cacatcgaagaattcgagtgcgtagcgcgtgacacgaaattgggtaaagaagagatcact
cgcgatatcgcaaacgttggtgaagaagcacttaaagacctggacagctctggtatcatc
cgcatcggtgcggaagttcgccctggcttcatcttggttggtaaagtaactccaaaaggt
gaaacgcaactttctcctgaagaaaaacttttgagagctatcttcggtgaaaaagctggt
gacgtacgtgatacatcacttcgcgctccatctggcgtttacggtacagttatcgacgct
caagtttactctcgtgaaggtgctgaccgtgacgaacgtttggcttcaatcatcgaagag
aaaaaacgtaagcttgaaaaagacttggctgttgagcaaaacgttatcaaaaataacgcg
atctctaaacttcgcgacatcttggtaggtaaagtaactactggcgtgttgttgaatgaa
gacggttctcaaaagctattgaacaaaggtcaaaacatcacgatcgcggatatcgaaaca
attccattcgaattgttgaactatatccctcttgaacaagatcttgagttccaagttaat
aaaattatcgacaacgctcgtaaccaacttgacgcagttaaattggtcttcaatgagaag
atcgatcgcttgcgcaaaggtgacgaattgcctcctggcgtaatcaaaatggttaaagtt
tacgttgctattaaacgtaaaatgcaagtcggcgataaattcgcgggccgccacggtaat
aaaggtgtcgtttctaaagtattgccacttgaagatatgccatatcttgcggacggtact
ccagttgacatggttctaaacccactgggcgttccttctcgtatgaatatcggtcagatc
cttgaggtgcatttgggttgggctgctcataacttgggtaaacaacttggcgaacacttg
caaaagtggaacgcagaaaatgctcgtaaggaaatgaaagacatcttcaatgattctgat
atcagcgcgaaacttgatggcgcagatgaggcttcattgaaatcaatggtgacacgtatg
aagaacggtatccacgtgggtactccagtattcgacggtgctcgtgaatctgacgtgaag
ggcttgcttgataaagcacaagttccaacgtctggtaagtcgatcctattcgacggccgt
acaggtgaaccgttcacgaacccagttacagtgggcatcatgtacatgttgaaacttcac
catctagtggaagagaagatccatgctcgttctatcggaccttactctctggtgtcgcaa
caaccattgggcggtaaagctcaattcggtggtcagcgtctaggggagatggaagtttgg
gcgatcgaggcatacggtgctgcttactcattgcaagagttcctaactgttaagtcagat
gacgtagcaggtagaacacgcatgtacgaaagcatcgtgaaaggtgaaaacatccttgag
ccgggtcttcctgaatcgttcaacgtattggtgaaagagcttcagtctcttgcattgaac
gttgagttgatggagtccgacatccttcgtgaccaagatgaagatcttggtgaagaagtg
atcgagggtggtgatttaactggtggttcggctccaacagagccaggccaacactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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