KEGG   Bifidobacterium dentium Bd1: BDP_1585
Entry
BDP_1585          CDS       T01143                                 
Symbol
dnaE
Name
(GenBank) DnaE DNA polymerase III alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bde  Bifidobacterium dentium Bd1
Pathway
bde03030  DNA replication
bde03430  Mismatch repair
bde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BDP_1585 (dnaE)
   03430 Mismatch repair
    BDP_1585 (dnaE)
   03440 Homologous recombination
    BDP_1585 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bde03032]
    BDP_1585 (dnaE)
   03400 DNA repair and recombination proteins [BR:bde03400]
    BDP_1585 (dnaE)
Enzymes [BR:bde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BDP_1585 (dnaE)
DNA replication proteins [BR:bde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BDP_1585 (dnaE)
DNA repair and recombination proteins [BR:bde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BDP_1585 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon tRNA_anti_2 DUF5487
Other DBs
NCBI-ProteinID: ADB10179
UniProt: D2Q5G4
Position
complement(1777106..1780672)
AA seq 1188 aa
MQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPII
GIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLV
NLMKASTDANLEGRVMRYPRMDKEILSKYSKGIIASSGCPSGIIQTRLLLGQFDEALRAA
GELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQD
AMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDDH
EDGAFMPQFDCPEGWDETSLFLKKVEEGLEKRYDGNPPIEVLKQADYECGVICQMQFCGY
FLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERFLNPERVSLP
DIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGFDFSMGERVT
KALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMGIEGLIRQTG
VHACATIMGSEPITNTSPLLERTDGTVTTTLEYHTCETLGLVKMDFLGLSNLTVIRDTLN
NIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLKPSNFNDISAL
IALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQEQVQSAAR
ILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVWDILVPFSGYA
FNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRMGIQVLSPD
VNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDFVRRVPLSALN
RRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFSDLDDSAEQDG
MGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMSIAHLIDRAGT
MPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFFGKVYEAAAPELAVDTV
VQIRGQVERRDETVSLRATEFQVPTLEAEDERPLVITLPQVALNRDHVMRLGRILNDHPG
YCEVRLAIMDDQGNAKVLTFGDRFRVKRDTSLFAEIKILFGPSSLPMA
NT seq 3567 nt   +upstreamnt  +downstreamnt
gtgcaactgcataaccatacgcactattcgctgctcgacggcgcttcgaagataccggat
ctggtcaaacgcgccaaggaactgaacatgccggccgtcggcatcacggatcatggcaac
atgcatggcgcctatgagatgtggagcaccgcagtcaatgcgggcatcaagccaatcatc
ggcatcgaagcctatgtcacgccggaaaccgcacgccaggacccgacccgagtgagctgg
gataccaactggaacccggatcttgacccgaaccatcgcaaacgcaaccccaacgacgtg
tccggcggcggcctgatcacgcatctgaccatgtgggcggagaccgacgaaggcctcgtg
aacctcatgaaagcctcgaccgacgcgaacctggaagggcgtgtcatgcgttacccgcgc
atggacaaggagatcctatccaagtattccaaggggattatagcctcatccggttgccct
tcgggcatcatccaaacccgattgctgctcggtcaattcgatgaggcactacgtgcggcg
ggggagctgcaggacatcttcggccgagacaacttctacatcgaattcatggaccacggg
ctgaatatcgaaagacaggtgaccgacgggctgcttgacatcgccaaaaagctcaatgcg
ccgttgctggcgaccaacgattcccattacgtgcgtgcggaggatgccggcgcgcaggac
gccatgctgtgcatcaactccggctccaccctcgacgagccgggacgattcaagttcgac
ggtaccggctactacctgaaatccgccgaagagatgcgtgaactgttcaaggaccttccc
gaggcatgcgacaatacgctggagatcgccgaacgctgcaacgtgatgttcgacgatcat
gaggatggcgccttcatgcctcaattcgactgccccgaaggatgggacgagacctcgctg
ttcctgaagaaagtcgaagagggcctggaaaagcgatatgacggcaatccgccgatcgag
gtgctcaagcaggccgactacgaatgcggcgtaatatgccagatgcagttctgcggttac
ttccttgtcgtggccgactacatcaactgggccaagacgcacggtgtgatggtggggccc
ggccgtggttccgctgcaggcgccatggtggcatacgccatgggcatcaccgaactcgac
ccgatccagcacggtctgattttcgaacgcttcctcaatccggagcgagtctccctgcct
gatatcgacgtggatttcgatccggacggccgcggccgcgtactcgactatgtcggcgag
aaatacggtcgtgacaaggtggcgcaatgcgtgatctacggcaccatcaaaaccaagcag
gccttgaaggattccgcacgcatcatgggcttcgacttttccatgggcgagcgcgtgacc
aaggcgttgccaccggcgcagacgggcggcaaggacatcccgttgcacgatatcttcgat
ccggcctcgaaacgctatgccgaagcgcgtgagttccgggagctgtacgattccgatccg
gatgccaagcgtgtgaccgatgaggcgatgggcatcgagggtctgattcgtcagaccggc
gtgcatgcctgcgccaccatcatgggtagtgagccgattaccaacacctcgccgctattg
gaacgtaccgacggtaccgtcaccactacgctcgaatatcacacgtgcgaaacgctgggt
ctggtcaagatggacttcctcgggctctccaacttgacggtgattcgtgacaccctgaac
aacatcgaggcgaacggcaaggaccgcatcgaccataccaggattcctttggatgacaag
gccacgtacgagttgctgtcgcgaggcgacacccttggcgtgttccagctcgattccgac
ggcatgcgctcgctgctgaaaacgttgaagcccagcaacttcaacgatatctccgcgttg
atcgccttgtaccggccgggccctatggatatggattcgcataccaactatgcgaagcgt
aagaacggcctgcagaagatcacgccgattcatcccgaagtggccgaaccgctcaaggag
gtgcttgacgagacctatggtctgatcgtgtaccaggagcaggtgcagtcggccgcgcga
attctggcgggttactctttgggtaaggcagatgtgttgcgccgagccatgggcaagaag
aagccggaagtgttggccaaggagaaaatcccgttctttgcgggcatgaaggagcatggc
tactcgcaggaggcggcccaggccgtgtgggacattctggtgccgttctcggggtatgcg
ttcaacaaggcgcattccgccgcatacggtttgatctcctattggaccgcgtatctgaag
acgcactatccggtggaattcatggccgccctgctacagggcgccagcaccaataaggac
aagaccgcactgtatctcggcgaggcgcggcgcatgggcattcaggtgctgtctccggac
gtgaatgagtcggtattcgaatattcggcggtcggcgatgtcgtgcgattcggtctcggt
gccatccgcaatgtcggcaggaacgccgtcgatgacatcatcaaggagcgcgagagcggt
catggcaagtatgtgaacttcccggatttcgtgcgtcgcgtgccgttgagtgccttgaac
cgtcgtctggtggaatcgttgatcaaggccggagccttcgattcggtcgatccgaaccgt
cgtgcgctgttcaccattcatgaggctgccatcaattcggtggtgggcatcaagcgcaag
caggcggaagggcagttcgatctgttctccgatctggatgattcggccgaacaagacggc
atgggagacgccatggtgagcgtgccggatgtggaggaatgggataagaaaaccaagctc
aacttcgagcgtgagatgctgggcctgtatgtgtccgaccatccgttgagcggcatgcag
tcggtgttgtcgagtctgcgtgagatgtcgatcgcgcatctgatcgatcgcgccggaacc
atgcctgacgggcagcaggtcacggtagccgggctgattacgaatgtggaccgtcgcgta
tcgaagaagggcaatccttgggcgatcgtcaccatcgaggatttggaaagctccatccag
tgcatgttcttcggcaaggtatatgaagcggccgcgccggaactggcggtcgacaccgta
gtgcagatccggggccaagtcgagcggcgcgacgaaaccgtgagtctgcgtgccacggaa
ttccaggtaccgaccttggaggcggaggacgagaggccgctcgtgatcacgctgccgcag
gttgcactgaaccgtgatcatgtgatgcggctcgggcggattctgaacgaccatcccggc
tattgcgaggtgagacttgccatcatggacgatcagggcaacgccaaggtgctgaccttc
ggcgatcgcttccgcgtgaagcgggacacctccctgttcgccgagatcaagattcttttc
ggtcccagctccttgcccatggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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