KEGG   Bifidobacterium dentium Bd1: BDP_1781Help
Entry
BDP_1781          CDS       T01143                                 

Gene name
rpoC
Definition
(GenBank) DNA-directed RNA polymerase subunit beta' RpoC
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bde  Bifidobacterium dentium Bd1
Pathway
bde00230  Purine metabolism
bde00240  Pyrimidine metabolism
bde01100  Metabolic pathways
bde03020  RNA polymerase
Module
bde_M00183  RNA polymerase, bacteria
Brite
KEGG Orthology (KO) [BR:bde00001]
 Metabolism
  Nucleotide metabolism
   00230 Purine metabolism
    BDP_1781 (rpoC)
   00240 Pyrimidine metabolism
    BDP_1781 (rpoC)
 Genetic Information Processing
  Transcription
   03020 RNA polymerase
    BDP_1781 (rpoC)
Enzymes [BR:bde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BDP_1781 (rpoC)
Transcription machinery [BR:bde03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BDP_1781 (rpoC)
DNA repair and recombination proteins [BR:bde03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BDP_1781 (rpoC)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Pentapeptide TraF_2 FadA Pentapeptide_3
Motif
Other DBs
NCBI-ProteinID: ADB10368
UniProt: D2Q603
Position
complement(2029347..2033360)
Genome map
AA seq 1337 aa AA seqDB search
MLDVNAFDKLRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTGVDEEQRHQDLPDLQDEFDTEITNLEKRRNAEIEDRAKKVEAD
LAQLEAEGEAKGSARAKLRNSAEREMAAIRTRFDEQIQRLNAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLDAAAKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPQDFVLPKDWEPSELKVVDPEPGSPDVVKEER
FHDGSVLFATSYGRILFNSTLPLDYPFVNDQAPKKRLSKIVDDIATRYPTAQVAATLDAL
KDMGFTRAPWSGVSFAFSDVIQPPERDEYIEKYEAEADKVNENYEIGMLTEEERRQELID
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LPMKVGERDENGNLVLVKAADGGPYSRLLASDVIDPADGETVLYKAGDALSMDVLNDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDRGRQVTLKPDDDS
VEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMEAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAVVEPDKAIRDTIYPNFGLGGDETGADFGDADLSDVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQMDLGDTL
NT seq 4014 nt NT seq  +upstreamnt  +downstreamnt
gtgctggacgtcaacgcatttgacaaactgaggatcggcctggccaccgccgacgacatc
cgtaactggagctatggcgaggtcaagaagcccgagaccatcaactaccgtaccctgaag
ccggagaaggacggtctgttcggcgagcagatcttcggacctacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtg
gaagtgaccaagagccgtgtgcgccgtgagcgcatgggccatatcgagctcgccgccccg
gtgacccacatctggttcttcaagggtgtgccgtcccgactgggctacctgcttgacatc
gcgccgaaggatctggagaaggtcatctacttcgccgcctacatggtcaccggcgtggat
gaggaacagcgtcatcaggatctgcccgatctgcaggacgagttcgacaccgaaatcacc
aatctggagaagcgccgcaacgccgagatcgaagatcgcgccaagaaggtggaagccgat
ctggcccagcttgaggccgaaggtgaagccaagggctccgcacgcgccaagctgcgcaac
agcgccgagcgtgagatggccgccatccgtacccgcttcgacgagcagattcagcgtctg
aacgccgtgttcgaccgcttcaagaacctgaagccgggcgacatggaaggcgatgtggac
ctgtggcgtgagatggaggatcgctacggcgattacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgtctgcaggacttcgaccttgacgccgctgccaagcagctgcgcgag
gagatcgacaccggcaccggtcagcgcaaggcccgtgccctcaagcgcctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgatgtgattccggtc
attccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgccacctccgat
ctcaacgacctctaccgccgtgtgatcaaccgtaacaaccgactgaagcgactcatcgag
ctcggcgccccggaaatcatgctcaacaacgaaaagcgcatgctccaggaagccgttgac
tccctgttcgacaacggtcgtcgtggtcgcccggtgaccggtgcctcgaaccgcccgctc
aagtccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctgctgggt
aagcgagtggactactccggtcgttccgtgatcgtggtcggcccgtccctgaggatgcat
cagtgcggtcttccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgt
ctggtggacctcaactatgcgcagaacatgaagagcgccaagcgtctggtggaccgtggc
gattccgaggtgtggggcgtgctcgaagaggtcatcgccgaacatccggtgctgctgaac
cgtgcccctacgttgcaccgtctgggcatccaggccttcgagccgattctggtcgaaggc
aaggccatccatctgccgccgctcgcctgcgccgcattcaacgccgacttcgatggcgac
cagatggcagtgcatctgccgctgtccgccgaagctcaggccgaagcccgctcgctgatg
atggcgtccgacaacattctgaagccggcggacggtcacaccgtgaccatgccgagccag
gacatgatcctcggtctgtattacctgaccaccgtcatcgacggcgccaagggccagggc
cgtgtgttctcctcgctggaagaggccgaaatggcccttgacaagcacgagatcgacatg
caggccaaggtgctcatccgtctgccgcaggacttcgtgctgccgaaggattgggagccg
agcgagctcaaggtcgtcgacccggaaccgggcagcccggacgtggtgaaggaagagcgc
ttccacgacggttccgtgctgttcgccacctcctacggccgtatcctgttcaacagcacg
ctgccgctggattacccgttcgtcaacgatcaggctccgaagaagcgtctgagcaagatc
gtcgacgacatcgcgacccgttatccgaccgcccaggtggccgcgacgctggacgccctg
aaggatatgggcttcacccgtgcaccgtggtccggtgtgtccttcgcgttctccgacgtc
atccagccgcccgagcgtgacgagtacatcgaaaagtacgaggccgaggctgacaaggtc
aacgagaactacgaaatcggtatgctcaccgaagaggagcgccgtcaggaactcatcgac
ctgtggaccaagtgcaccagcgaggtgtccgaggcggtcgaggaacacttcgactccaag
aacaacctggccatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggtatgcgaggcctcgtggcgaacccgaagggcgagatcattcctcgaccggtg
aagtccaactaccgcgacggtctgtccgtgctggagtacttcatctcccagcacggtgcg
cgtaagggcctggccgataccgcactgcgtaccgctgaatcgggctacctgacccgtcgt
ctggtggacgtctctcaggatgtaatcgtgcgcgaagaggactgcggcaccaagcgcggc
ctgcccatgaaggtcggcgagcgtgacgagaacggcaacctcgtgctcgtcaaggccgct
gatggcggcccgtactcccgcctgctcgcttccgatgtgatcgatcctgccgacggcgaa
accgtgctgtacaaggcgggcgacgcgctgtccatggatgtgctcaacgaccttgtcgcc
cacggtgtggaagaggtcaaggcccgttccgtgctgacctgcgaatccaagcgtggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaagcc
gtcggcatcgtggctgcacagtccatcggcgagcctggtacccagctgacgctgcgttcc
ttccactccggcggcgtcgcatccgcttccgatatcacccagggtctcccgcgtgttacc
gagcttttcgaagcccgtaccccgaagggcgaggctccgatcgccgagttcccgggcgtg
gtgaaggtcgaagacaccgatcgcggtcgtcaggtcaccctgaagccggacgacgactcc
gtcgagccgatcgtctacccggtgacccgtcgcgctccgatgctggtcaaggacggcgat
catgtcgaagccggcacccagctcatcgagggttccgtggatccgaagaagatcctgcgc
atcctcggtccgcgcgccgctcaggtcaacatcgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgtatcaccgtgatcgactccggcgacaccgacctgctgccgggcgaactcgtggaccag
gcacgcttcaaggccgccaacatggaggccgtgaagaacggtggcaagccggccgccggc
cgtccggagctgatgggcatcaccaaggcttcgctggccaccgactcctggctgtccgcg
gcctccttccaggagaccacccgcgtactcaccgaagccgccctgagccagaaggtcgat
gacctcaagggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtacgggt
ctcgcccgctatcgcaatgccgtggtcgagcccgacaaggccatccgtgacaccatctat
ccgaacttcggcctgggtggcgacgaaacgggtgccgacttcggcgacgccgatctgtcc
gatgtggacttctccaacatcgacttcggtgatttgaagctcggcgacgacttcaacccg
gatgacttcctcgacgataacggcggtcagatggatctgggagacaccctctga

DBGET integrated database retrieval system