KEGG   Phocaeicola dorei HS1_L_3_B_079: GV66_03810
Entry
GV66_03810        CDS       T03263                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bdh  Phocaeicola dorei HS1_L_3_B_079
Pathway
bdh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GV66_03810 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdh03021]
    GV66_03810 (rpoB)
   03400 DNA repair and recombination proteins [BR:bdh03400]
    GV66_03810 (rpoB)
Enzymes [BR:bdh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GV66_03810 (rpoB)
Transcription machinery [BR:bdh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GV66_03810 (rpoB)
DNA repair and recombination proteins [BR:bdh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GV66_03810 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_5
Other DBs
NCBI-ProteinID: AII66900
UniProt: A0A076J0D5
Position
complement(1057767..1061579)
AA seq 1270 aa
MSSNTENQRVNFASIKNPMKYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPHYSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
YLGPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIFNLAEDVKVNKTNLKKVVGRK
LAARVLKTWTEDFVDEDTGEVVSIERNEVIIDRETVIEEEHIDEIIDSGVQNILVHKEEA
NSSDYSIIFNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGE
VGRYRINKKLGLTTDMDVKVLTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAIGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINELGFISTPYRKVADGKVDISDEGIEYLTAEEEEDKIIAQGNAPLDDEGKFVREKVKA
RRDADYPVVTPDQVELMDVSPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTE
APIVGTGIEKQLVEDSRTQIAAEGDGVVEYVDATTIRILYDRNEDEEFVSFEPALKEYRI
PKFRKTNQSMTIDLRPTCDKGQRVKKGDILTEGYSTQGGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVDEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRV
GARIEPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKL
FSRVIKSRSEKNADKAILPKLNDEFEEKAAKLKDILIEKLLVLTNGKVSQGVKDYLGTEV
IAKGAKFTKRDLESLDYTIIQLSKWTADAHKNDMIRDLVMNYLKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKELGVKFATPIFDGASMDDLNEWTDKAGLPRYCKT
YLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAAHILQEILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHEL
RGLGLSINLE
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgtcttcaaatactgaaaatcaaagagttaattttgcttccattaagaatccgatgaag
tatccggatttcttggaagtgcaattgaagtcattccaagactttttacagttggatacc
ccgcccgaaaaacgtaagaatgacgggctgtacaaggtatttgctgaaaacttccctatc
gctgacactcgtaataactttgtccttgaattcttggactattacattgacccgcctcac
tattcaatagacgagtgtctggagcgtggcctcacatacagcgtgcccttgaaggcgaaa
ttgaagctgtattgtactgatcctgatcatgaagattttgacacagtcattcaggatgtt
tatctgggtcctattccgtatatgactccgaaaggaacttttgtaattaatggtgcagaa
cgtgtagtcgtttctcagttgcatcgttctccgggggtattctttggtcagagcgtacat
gctaacggtacgaaattgtattctgcccgtattatcccgttcaaaggttcatggatcgaa
ttcgcaacagacatcaataatgtgatgtatgcgtatatcgaccgtaaaaagaaattgcct
gttactactctgctgagagctgtaggctttgaaaatgataaagatatcctcgaaatcttt
aacttggctgaagacgttaaagttaacaagactaatttgaagaaagtcgtaggaagaaaa
ctcgctgctcgtgttttgaaaacatggacagaagatttcgtagatgaagacactggtgaa
gtagtttctattgaacgtaatgaggttatcatcgaccgtgaaactgtaattgaagaggag
catatcgatgaaattattgattcaggcgttcagaatatccttgttcacaaggaagaggcg
aattcatccgactattctattatatttaatactcttcagaaagacccgagtaactctgaa
aaagaggctgtgctttatatctaccgccagttgcgtaatgcagacccggctgatgatgcc
agtgcccgtgaggttatcaacaacctgttcttctctgaaaaaagatatgaccttggtgaa
gtaggccgctatagaatcaacaaaaagttgggtctgactacggatatggatgtgaaggta
ttgacaaaacaagatattattgaaatcatcaagtatctgattgagttgattaattctaaa
gcggatgttgatgatattgaccacttgagcaaccgccgtgtacgtacggtaggcgagcag
ttgtctaaccagtttgcgattggtttggcacgtatgtctcgtactatacgtgaacgtatg
aacgtacgtgacaatgaagtgtttacaccgattgatttgattaatgcaaagacaatttct
tctgttatcaattcattctttggtacaaatgctttgtctcagttcatggatcagactaat
ccgttggctgaaatcactcacaagcgtcgtttgtcagcgttaggtcctggtggtttgtca
cgtgagcgtgccggtttcgaggttcgtgacgtacactatactcactatggtcgtttatgt
ccgatcgaaactcctgaaggtccgaatatcggtttgatttcttctttgtgtgtgtatgct
aagattaatgagcttggctttatttcaactccttatcgtaaagtagctgatggtaaggtg
gatatatctgatgaaggtattgaatatctgacagccgaagaagaagaggataagattatc
gctcagggtaatgccccgttggatgatgaaggtaaatttgttcgtgagaaagtaaaagcc
cgccgtgatgctgattatccggttgttactcctgaccaagtagagttaatggatgtttct
ccacagcagatcgcttctattgctgcttctttgattccgttcttggaacatgacgatgct
aaccgtgcattgatgggatcgaatatgatgcgccaggcagttcctttgttgcgtacagaa
gctcctatcgtaggcacaggtattgaaaaacaattggttgaagactctcgtactcagatt
gctgcagaaggtgatggtgttgtagaatatgtagatgcaacgactatccgtatcctgtac
gatagaaatgaagatgaggaattcgtaagcttcgaacctgctttgaaagaatatagaatt
cctaaattccgtaaaaccaaccaaagcatgactattgaccttcgtcctacttgtgataag
ggccaacgtgtgaagaagggtgatatcctgactgaaggatattcaactcagggtggtgag
cttgcattgggtaaaaacctgttggtggcttatatgccttggaaaggttataattacgag
gatgctattgtattgaatgaacgcgttgtacgtgaggacttgctgacttctgtacacgtt
gatgaatatattttggaggtccgcgaaacgaaacgcggtatggaagaattaacttctgat
attcctaatgtgagtgaagaagctaccaaagatttggatgaaaacggtattgtacgtgta
ggtgcacgtatcgaaccgggtgatatcttgattggtaagattactccgaaaggtgaatca
gatccttctccggaagaaaaattgcttcgtgctattttcggtgataaggcaggtgatgtg
aaggatgcttcattgaaagcttctccgtcattacgtggtgtcgttattgacaagaagttg
ttctcacgtgttatcaagagtagaagtgagaagaatgccgataaggctattctgcctaaa
ctgaatgatgaattcgaagaaaaggcagcaaaactgaaagatattttgattgagaaacta
ttggttttgactaatggtaaggtttcccaaggagtgaaagattatttgggaacggaagtt
attgccaagggggcgaagttcaccaaacgcgatttggaatcattggattatactattatc
cagttgagcaagtggacagctgatgctcataagaatgatatgattcgcgacttggtgatg
aattatttgaagaaatataaagaattggatgctgaattaaagcgtaagaagtttgctatc
actatcggtgatgaacttcctgcgggcattattcagatggctaaggtttatattgccaag
aagcgtaagattggtgtaggtgataagatggcgggacgtcacggtaacaagggtattgtt
tctcgtgtggttcgtcaggaagatatgccgttcttagcagatggtactccagtagatatc
gtattgaatccgttgggtgtgccttctcgtatgaatattggtcagattttcgaagccgta
ttaggtcgtgccggaaaagagttgggtgtgaaatttgctactcctatttttgatggtgct
tctatggatgatttaaatgaatggacagataaagctggattgcctcgttattgtaagact
tatctttgtgatggtggtacaggtgaacgctttgaccaacctgcaacagtgggtgtaact
tatatgttgaaactagggcacatggttgaagataagatgcatgcccgttctatcggtccg
tactcccttattactcagcagccgcttggtggtaaggcacagttcggtggtcagcgtttc
ggagaaatggaagtttgggcgcttgaagcattcggcgcagcacatatcttacaggaaatt
ctgaccattaagtctgatgacgttgtaggacgctcaaaggcttacgaagctattgtgaaa
ggtgaacctatgccaactccgggtatccccgaatctctgaatgtattgttacacgaactg
agaggtcttggcttgagtatcaaccttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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