KEGG   Brachypodium distachyon (stiff brome): 100823067
Entry
100823067         CDS       T01717                                 
Name
(RefSeq) nuclear poly(A) polymerase 4
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100823067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100823067
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     100823067
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     100823067
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 Nrap_D2 Polbeta
Other DBs
NCBI-GeneID: 100823067
NCBI-ProteinID: XP_024316970
Position
3:6802501..6809352
AA seq 696 aa
MAGSVATGRVTPQSSLKRSSGMDPPLSLAGPTMVDLQKTSELEKFLVEAGLYEGEEQSAK
REEVLREIGRIVKEWVKQLTSQKGYADQMVEKANAVLFTFGSYRLGVHGPEADIDIVCVG
PSYVNREDDFFVTLHDILAQMEEVTQLQPVPDAHVPVMKFKFQGIPIDLLYARVSLSVIP
PDFDISQGSVICDVDEATVRSLNGCRVADQILRLVPNTENFRTTLRCLRYWAKRRGVYSN
VTGLLGGVNWAILVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLRAIENDDLGFSA
WDPRKNPRDRSHVMPIITPVNPRMNSSYNVSTSTLRVIMEQFKLGNKILQEIELNKASWT
ALFEPFQFFEAYTKYLVVDIVADDDDDLRLWKGWVESRLRQLTLKIERDTKGMLQCHPYP
LEYANPLAQCAHSSFYMGLSRKEGMKMHGQKFDIRGTVDEFMHEMGLYTSWKSGMDLAVT
HVHKKQIPYYVFEQGYKKHCPPMLPNEQEQSDRNDNEDGTLTGSLEGQLKRKHDIDEAGH
IESCKSVKRSSVSPGYKETPPEYGSNISKIVCENPVKSVSSALCSGLQNSLLHGDVSLEP
SNCSSSPHGSEESTASGSSCAAVETVGLVDETVDPESSMPCIVNGTVQTMAVHTPIKCVA
EKDEMKFEGINSLANRAEFLDKPEMLTGNILPENLH
NT seq 2091 nt   +upstreamnt  +downstreamnt
atggcgggatcggtggccaccggaagggtgacgcctcaatcgtccctgaagcggtccagc
ggcatggatccgccgttatctttggctggaccgaccatggtcgatctccagaagacgtct
gagctggagaagttcttagttgaagcgggcctttacgagggagaggagcagtctgccaaa
cgggaggaggtgctacgcgagattggtcggatagtcaaggaatgggtgaaacagttaact
agtcagaaagggtatgctgaccaaatggttgaaaaggcaaatgcagttcttttcactttt
ggatcttaccgattgggggttcatgggcctgaagctgacatcgatattgtatgtgttgga
ccatcatatgtgaaccgagaggacgatttctttgtcacactacatgacatattagcacaa
atggaagaagtgactcaactgcagcctgtacctgatgctcatgtacctgttatgaaattt
aagtttcaagggataccaattgatcttctctacgccagagtatctctttcagtaatacca
ccagattttgacatctctcaaggatctgtgatttgtgatgttgatgaagcaactgttcga
agtcttaatgggtgcagggtggcagaccagattcttcgacttgttccaaacactgagaac
ttcaggacaacactcaggtgtttgaggtactgggcaaagagaaggggtgtttattctaat
gttactggtttgcttgggggtgtcaattgggccatattggttgctcgtgtctgccaactc
tatcctaacgctgttccaagtatgctggtttcaagattcttcagagtttttacacagtgg
cagtggccaaatccggtgatgcttcgtgcaattgagaacgatgaccttggtttttcagca
tgggatccacgtaaaaatcctcgtgatagatcccatgttatgcccatcattactccagtc
aatccacgcatgaactctagctacaatgtttcgactagcacattgagggttatcatggag
caatttaagctcggaaacaaaattctccaggaaatcgagcttaataaggccagttggact
gctttgtttgagcctttccagttttttgaggcatatacaaaatatctagtggtcgacatt
gttgcagatgatgacgatgatcttcggctttggaagggatgggttgaatctcgactgaga
cagctgactttaaagattgagcgggacaccaaaggaatgctgcagtgtcatccttaccca
ttggagtatgcaaatcctttggcacagtgtgctcactcttccttctacatgggcttatca
aggaaagaggggatgaaaatgcatggtcaaaaatttgatatccgaggaacagtagatgag
tttatgcatgaaatgggattgtatacatcgtggaagtctgggatggatttagcagttacc
catgttcataagaagcagatcccctattatgtatttgaacagggttacaagaaacattgt
ccaccaatgcttccaaacgagcaagagcagtctgatagaaatgacaatgaagatggcaca
ctgactggatccctggagggtcaacttaagagaaagcatgatattgatgaagctggtcac
atcgaatcatgcaaatctgttaaaaggtcttcagtaagtccaggttacaaggaaactcca
cctgagtatgggagcaacatcagtaaaattgtatgtgaaaacccagtcaaatcggtttct
agcgctctctgtagtggacttcagaatagtctgttgcatggtgatgtaagtctggaacca
tcaaattgctctagttcaccacatggatctgaggagtctactgcgtcaggctcaagctgt
gcagcagtggaaacagttggtttagttgatgaaactgttgatcctgaaagctcaatgcca
tgtattgtaaatggcacggttcaaacaatggcagtccacacgcctataaaatgtgtggct
gagaaggatgaaatgaagttcgagggaatcaatagcttggcaaatcgtgctgagtttctg
gacaaaccagaaatgctcactgggaacatccttcctgagaatctgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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