KEGG   Brachypodium distachyon (stiff brome): 100837002
Entry
100837002         CDS       T01717                                 
Name
(RefSeq) TATA-binding protein 2 isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100837002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:bdi03000]
    100837002
   03021 Transcription machinery [BR:bdi03021]
    100837002
Transcription factors [BR:bdi03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    100837002
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100837002
  RNA polymerase III system
    TFIIIB
     100837002
  RNA polymerase I system
    SL1/TIF-1B
     100837002
SSDB
Motif
Pfam: TBP DUF3378 DUF4295
Other DBs
NCBI-GeneID: 100837002
NCBI-ProteinID: XP_014758871
UniProt: I1IG88
Position
4:complement(730718..735462)
AA seq 202 aa
MAEAAAALEGSQPVDLSQHPSGIVPMLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFA
AVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNI
VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVR
EETYTAFENIYPVLTEFRKVQQ
NT seq 609 nt   +upstreamnt  +downstreamnt
atggcggaggcggcggcggcgttggaggggagccagccggtggacctgtcccagcacccc
tccggcatcgtccccatgctccagaatatcgtgtccacggtcaacttggactgtaaactg
gacctgaaagcaatagctcttcaagcgcgcaatgcagaatataaccccaagcgtttcgct
gcagttatcatgaggataagagaaccaaaaaccaccgcattgatatttgcatcaggaaaa
atggtttgcactggagcaaaaagtgaacagcagtctaaacttgcagctagaaagtatgct
cgcatcatccagaagcttggctttcctgcaaaattcaaggacttcaagatccagaatatt
gttgggtcttgtgatgtcaaattccctataaggcttgagggccttgcatattctcacggt
gctttctcgagttatgagccagagctattcccaggcctgatttatcggatgaggcaacca
aagattgtcctcctaatttttgtttcaggcaagattgttcttactggagcaaaggtgaga
gaagagacatatactgccttcgaaaacatatatcctgtcctcacagagttccgaaaagtc
caacaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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