KEGG   Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1268
Entry
BBDE_1268         CDS       T04222                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bdn  Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03030  DNA replication
bdn03410  Base excision repair
bdn03420  Nucleotide excision repair
bdn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBDE_1268
   03410 Base excision repair
    BBDE_1268
   03420 Nucleotide excision repair
    BBDE_1268
   03430 Mismatch repair
    BBDE_1268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bdn03032]
    BBDE_1268
   03400 DNA repair and recombination proteins [BR:bdn03400]
    BBDE_1268
Enzymes [BR:bdn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BBDE_1268
DNA replication proteins [BR:bdn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BBDE_1268
DNA repair and recombination proteins [BR:bdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BBDE_1268
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BBDE_1268
   MMR (mismatch excision repair)
    DNA ligase
     BBDE_1268
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BBDE_1268
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT HHH_3 UPF0758_N
Other DBs
NCBI-ProteinID: BAQ27262
Position
complement(1488850..1491543)
AA seq 897 aa
MTQHDDSEQLAWDFDVSVDGTAEPEITVDADGDASRLVPGSERWIAALQSTDADAMRLDR
LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSLD
TPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPMT
CEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPEFVE
IRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIGS
LRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEHRGDIEH
ALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTPVAI
LKPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREESL
HAFVMPTHCPSCGAELAPAKKGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQS
AIALTNPEEDRPDSVDTYAPEITEILVQPGEEPEPYEPVAGLRLPDAQTPVLSSEAGLFS
LTAADLKDVRVWREAPIIEIHETVDVNTGKTKKTRKRVGGSGLWHQVPAFWTAPTSARKL
SAKKLAELEVNGAAVSEYPEYNVPADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLD
EMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAE
SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSA
KEAIISHGGKAAGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSSGTV
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgacacagcatgacgattccgaacagcttgcttgggatttcgacgtttcggtcgatggc
accgccgaacccgagattacggtggatgccgacggcgacgcctcccgactggtccccggt
tccgaacggtggattgcggcattgcagtccactgacgccgatgccatgcgactcgaccgg
cttgacgtctcttcgctgagtgccgaagcggcggcccggctgtgggcgaaggtcgcggcc
tgggtggaatccgatcagatcgcctactatatcgacgatgcccccatatcgtccgatgcg
gcctatgatgcgcggcttcgctgcctacaggcattggaatcgcaattcccgtccttggac
accccgcaatcgccgacccatcgcgtaggcggtaccttttccaacgattttgcctccgta
cgtcacccttcgcgcatgatgagcctcgatgacgtgttttccatcgaagagctgcgtgac
tggtacgacagtgtgatccgcgatctcgactggccggaatccaaaccgctgccgatgacc
tgtgaagtcaagatcgacggtctggcattgaatctcgtgtaccgtaacggcgtgctcgaa
cagggactgacgcgaggcgatggcgtgaccggcgaggatatcacgctcaacgtgcggacg
atttcgaccattccgcagaatctggccggcccggaaggcgatattcccgaattcgtggaa
atccgcggcgaggtgttcatgcgctgggacgacttcgccgcattgaacggcgagaatgag
gacgccggccgagccccattcgccaatccacgcaatgccgccgccggaagcctcagacag
aaagacccgcgcatcaccgccacgcgccgtctgagcttctacgcgcacggcatcggctca
ctacgctggggcgcgggacgtgccgacagacatgacgtgatcaaccatcaatccgaggca
tatgcgctgtatgaaaagtggggcgtgccggtttcgccgcataatcgcgaaatcacgtcg
ttcaccgacattcttgacatgatcgactactacggcgaacatcgcggcgatatcgaacac
gcgctcgacggcatcgtcgtgaaggtcgacgatcttggattgcagcgcgcgctcggtgcc
acctcacgtgcgccgcgctgggccatcgcctacaaatacccgccggaagaggtcaacacc
gatctgctcgacatcaccgtgcaggtcggccgaaccggccgcgtaaccccggtcgccatc
ctgaagcccgtatatgtggccggttccaccgtgtcacgtaccacgttgcataatcctttc
gaagtggagcgcaagggcgtgctcattggcgacaccgtggtggtacgcaaggccggtgac
gtgattcccgagctcgtgggcccggtgctcgagcgccgcaaggggcgggaggagagtctg
cacgcgttcgtcatgccaacgcactgcccgagctgcggtgccgaactggctccggccaaa
aagggcgacaaggacattcgctgcccgaatgtggaatcatgccctgcgcagttgaccgag
cgcatcatcaacttggcttcccgcaaggcgttcgatatcgaacatttgggcgatcaatcg
gcgatcgcgctgaccaatccggaggaggaccgccccgattccgttgacacgtatgcgccg
gagatcactgaaatactcgtccaacccggcgaagagcccgaaccctacgagccggttgcc
ggactgcggttgccggatgcgcagacgccggtgctctccagcgaggcgggcctgttctca
ctgaccgccgccgatctgaaggatgtgcgcgtatggcgcgaggcaccgatcatcgaaatc
catgaaaccgtcgacgtcaatacaggcaagaccaagaagacgcgcaagcgtgtgggagga
tccggactgtggcatcaggtgcctgcattctggaccgctccgacctcggccaggaaactc
tccgccaagaaacttgccgaactggaggtgaacggcgccgccgtttcggaatacccagag
tacaatgtgccggccgacgccgtagtgatccgtgaggataccaaggtgtcgcgcaccggc
gtgaccagcgtgcagccggtgtacgttcgccctgctgagaatacgcgcaagatgctcgac
gaaatggaaaaggcgaggcacgtggatttatggcgtgtgctcgtggcgctgtcgatccgc
cgcctcggtccgccgaccgcgcgcaccatcgccacggcctttggctcgctcgacgcaatc
gaacatgcgagcgtcgaggaactttcggcaatcgacggtatcggaccggaaatcgccgaa
tccgtggtcacatggttcactgccgcacacgaaccgggcaactggcgtggcacggtgttg
gatgcatggaagaccgccggcgtgggtgtggtggccgaaaccaacgatctgccgcagacc
ttggcaggcaaaacggtggtggtcaccgggtcattggtcgatttctcccgcgactccgcc
aaagaagccattatctcccatggcggaaaggcggccggctcggtcagcaggaaaaccgac
tgggtggtggtcggagagaacgccggatccaaagccgcaaaagccgaggaattgggcatt
cccatgctcaatgaggaccagttcaaacaactgctgagcagcggtacggtgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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