KEGG T03262: EL88

Phocaeicola dorei HS1_L_1_B_010: EL88_08625

Entry

EL88_08625        CDS       T03262

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

bdo Phocaeicola dorei HS1_L_1_B_010

Pathway

bdo03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bdo00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EL88_08625
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdo03400]
    EL88_08625
DNA repair and recombination proteins [BR:bdo03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EL88_08625
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      EL88_08625

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD PIP5K DUF2785 Kinesin AAA_16 DUF87 Viral_helicase1 DUF6664

Other DBs

NCBI-ProteinID:

AII63232

Position

complement(1960629..1962662)

AA seq 677 aa
MNFELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLI
LSHNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKL
RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLY
VRNDIELNRGNFRVKGDTVDIYLAYSDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYK
IYPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGH
CSGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLV
EYGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPV
IEVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDT
LERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA
ARNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNS
NEAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQ
YRDELLKLEDMMKERWG

NT seq 2034 nt +upstreamnt +downstreamnt
atgaattttgaattgatttccgaataccaacccaccggcgaccaaccggaagctatcgcc
cagctaaccgagggagtgctggaaggagtccccgcacaaactttattgggggttaccggg
tccggcaagactttcacgattgcaaatgtaattaaaaacatcaataaacccaccttgata
ttaagccataacaaaacattggcggcccagttatacggagagttcaagagtttctttccc
aacaatgcagtggaatactatgtatcttattatgactattaccagccggaagcatacctg
ccgtccagcgacacctatatagaaaaggatctggccattaatgaagagattgacaaattg
cggctggctgccacctctgccctgctgtcgggacggaaggacgtggtggtggtgtcttcc
gtgtcctgcatctacggtatggggaacccgtcggatttctataataatgtaattgagata
aaaaaaggcaaactgctggacagaaatgtatttttacgccgtttggtggacagcctgtat
gtgcgtaacgatatagagctgaatcgcgggaatttccgcgtaaaaggtgacacggtagac
atttacctggcatatagcgacaatctcctccgggttatgttttgggacgacgaaattgat
gccattgaagagatcgaccctgtttcgggaatccgtctggctacttttgatgaatacaaa
atttatccggccaatctttttatgaccaccaaagagagccagttgagagctattcatcag
attgaggacgacttgacgaaagaggtggccaaattcgaggaggaaggaaaaatgtatgag
gcgaaacgactctatgagcgcgtgacatacgatatggagatgattcgcgaactggggcac
tgttcgggcatagaaaattattcccgctactttgacgggcgtaatgcaggtacccgtcct
tactgtctgctggacttttttccggatgatttcctgattgtaatagacgaaagccatgtc
agcgtaccgcaaatacgtgccatgtatggtggtgaccgggccagaaaaaccaatttggtg
gaatatggtttccggatggagtcggcttttgacaaccgccctctaaaatttgaagagttc
aaggaactggccaagcaagtgatttatgtcagtgctacacctgccgattatgaattggtg
gaaagtgaaggcattatcgttgaacaggttatccgtcctaccggactgctggacccggta
attgaagtacgccccagtctgaatcagattgatgacctgatggaagagatacagcaacgc
atcgagaaagaagaacgtgtactggtgaccacgctcaccaaacgcatggcagaagaattg
accgaatatctgctgcgcaatgacatccgctgcaactacatccacagcgatgtggacact
ttggaacgcgttaagattatggatgaattacgtcagggcgtttatgatgtactggtgggt
gtgaacttgcttcgtgaaggtctggacttgcccgaagtgtctttggtcgccattctggat
gcagacaaagaagggttcctccgttcccaccgttcgctgacccagacagcaggacgcgcc
gcccgcaatatcaatggaaaagtaatcatgtatgcagaccgcatgacggacagcatgaaa
aaaacgatagacgaaaccaaccgtcgtcgcgaaaaacagctggcatataacgaagagcat
ggaatcacccccaaacaaatacagcgtgcgcgtaatgctgccttgttgggcaacaacagc
aacgaagcggcgggaaccactcaaggctccaaggcatatattgagccatcttccaataca
atggctgccgacccgattgttcagtatatgaccaagccacagatggagaaaacgatagaa
cgtacccggaaactgatgcaggaagctgccaagaagctggaatttatagaagctgcacag
tatagggatgaattgctgaaactggaagatatgatgaaagagagatgggggtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (20)   

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