KEGG T03897: VU15

Bacteroides fragilis BOB25: VU15_00205

Entry

VU15_00205        CDS       T03897

Name

(GenBank) DEAD/DEAH box helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

bfb Bacteroides fragilis BOB25

Pathway

bfb03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bfb00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VU15_00205
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bfb03019]
    VU15_00205
   03009 Ribosome biogenesis [BR:bfb03009]
    VU15_00205
Enzymes [BR:bfb01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VU15_00205
Messenger RNA biogenesis [BR:bfb03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VU15_00205
Ribosome biogenesis [BR:bfb03009]
Prokaryotic type
  rRNA helicases
   VU15_00205

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII RecG_N CMS1 Ig_Tie2_1

Other DBs

NCBI-ProteinID:

AKA50286

UniProt:

A0A149MTP4

Position

complement(50250..52160)

AA seq 636 aa
MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEDINDFMPEIYRKLEWLSKEDLIKR
MVSHEFNRFVDYYRNREEIEVPTDSRSERAGKSREGKSSRQAEPGYTRLFINLGKMDNFF
PHELITLLNNNTRGRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNWNGRKVTVEVAG
EEASTEHKGRGKRNEGNDQGGRGRSSAPSADRKERGKGSKDSKQADSRKGKKPSREERGY
SAARGPKGKDEWKQFFKDAEPDFSEEGWARRKPKKS

NT seq 1911 nt +upstreamnt +downstreamnt
atgaagacatttgaagagcttggcgtttctccggagatacgtaaagctattgaagagatg
ggatacgagaatcccatgccggtacaggaggaagtgattccatacctattaggagagaat
aatgatgtagtagctcttgcacagacagggacgggtaagaccgcagcgtttggcttgccc
ctcatccagaaaattaacgtaaaaaacagaatacctcaatcactcgttctttgccccaca
cgcgagctttgcctccagatagcaggcgacctgaacgactattccaaatacatcgacggg
ctgaaagtattgcccgtatacggcggttcatccatcgacagccagatacgcagcctgaaa
cggggtgtgcatatcattgttgccacaccggggcgactcctcgacctgatggaacgcaaa
acggtatctcttgccactgtcacaaacgtagtgatggacgaagcggacgaaatgctcaat
atgggctttacggacagtatcaatgccatcctggcagatgttccacaagaacgtaacaca
ctgcttttctcggccactatgagcccggaaatagcccgtatttcgaagaactaccttcac
aatgcaaaagagatcaccatcggacgcaagaacgaaagtacgagcaacgtgaagcatgtg
gtctataccgtacatgcaaaagataaatacgccgccctgaaacgcatcgtagactattat
ccgcagatttacggtatcatcttctgccgtacccgcaaagagacacaggaaattgccgat
aaactgatgcaggaaggttataacgctgactcgttgcacggagaactctcacaggcacag
cgtgacacggtgatgcagaagttccgcatccgcaacatccagattctggtagccaccgat
gtagccgcacgtggactggacgtagacgacctgacacacgtcatcaactacggattgccg
gacgatacggaaagttatacgcaccgtagcggacgtacaggacgtgccggaaagacaggt
acatccatcgccatcatcaatttgcgtgaaaaaggaaagatgcgcgaaatagaacgcatc
atcggtaagaaattcattgccggtgaaatgcctaccggtaagcagatctgcgagaaacag
cttctcaaagtgatagacgatcttgaaaaagtaaaggtaaacgaggaggatatcaatgat
ttcatgcctgagatttaccgtaaactggagtggctgagtaaagaagacctcatcaagcgc
atggtatcgcatgagttcaaccggtttgtcgactattatcgcaaccgcgaagaaatagag
gtgccgactgatagccgcagcgaacgcgccggaaaaagccgtgaaggaaaaagcagccgc
caggcagaaccgggttacacccgccttttcatcaatctgggtaagatggataacttcttc
cctcacgaactgatcaccttgctcaacaataacacacgaggaagagtagaattgggacgc
atcgacctgatgaaaaatttctcgttcttcgaagtggaagagaaacaagcacaaaacgtc
gtaaaggcgctgaaccggacaaactggaacggacgtaaagtcacagtagaggtagccgga
gaagaggcatctacagagcacaaaggacgtggaaagcggaatgaaggtaacgatcagggt
ggcagaggaagaagcagcgctccatctgccgaccgcaaagagagaggcaaaggcagcaaa
gacagcaaacaagccgacagccggaaaggcaaaaagccaagccgtgaggaacggggatat
tccgcagcccgcggccccaaaggcaaagatgaatggaaacagttctttaaagatgccgaa
cccgacttcagcgaagaaggatgggcaagaagaaagcctaaaaagagctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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