KEGG   Paraburkholderia fungorum: OI25_1108
Entry
OI25_1108         CDS       T03799                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
bfn  Paraburkholderia fungorum
Pathway
bfn02020  Two-component system
bfn02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:bfn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    OI25_1108 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    OI25_1108 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfn03021]
    OI25_1108 (rpoN)
Transcription machinery [BR:bfn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     OI25_1108 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_38 HTH_23
Other DBs
NCBI-ProteinID: AJZ60760
UniProt: A0A2T1B3N9
Position
1:1274562..1276079
AA seq 505 aa
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRV
AADGSLIAQAPNSSPPSDQMGGNTSSSSTSSSERAENGEPQGVDEYNGLASDGNGDASQW
NLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQASQRDRALITFLIESLDDD
GYLAATLEEVLADLPDELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLEQSP
TRTLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHILIRSLEPFPGAAYGKAEADY
VVPDIMVRKTAQGWQAELNPEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIK
NIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYML
TPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgaaagccagcctccaactccgcctatcgcagcatcttgcgctgaccccgcaactgcag
cagtccatccggctgcttcagctgtccacgctcgaactgcagcaggaagtcgcaatggcg
atctcgcagaatccgctcctcgagaacgaggacgactggatcgcgagccccctgcgcgtg
gcggccgacggttccctgatcgcccaggcgcccaattcttcgccaccgtcggaccagatg
ggcggcaatacgtcgtcctcgtccaccagcagcagcgagcgtgccgagaatggcgaaccg
cagggtgtggacgaatacaacggcctcgcgagcgacggcaacggcgatgcgtcgcaatgg
aatctcgacgattacggccgctccggcaatgcgtcggacgacgacgatctgccgccgctg
caaatccacgaatcgagcacctcgctgcgcgatcacctgatggcgcaacttcgcgtcacc
caggccagccaacgcgaccgcgcgctgatcaccttcctgatcgaatcgctcgacgacgac
ggctatcttgccgccacgctcgaagaggtgctggccgatctgcccgatgagctcgaagtc
gatctcgacgaaatgaatgccgcgctggcgttgctacacagcttcgacccggctggggtc
ggtgcgcgctccgcgtcggaatgtctcaagctgcaattgctgcggctcgagcagtcgcct
acccgcacacttgcgctcgacatcgtcgcccatcatctggaactgctcgccgcacgcgat
ttcacgcgcctgcgcaagcatctgaaggcgaacgacgacgatctgcgcgatgcgcatatt
ctgatccgctcgctcgagccgtttccgggcgctgcgtacggcaaggccgaggccgactac
gtggtgccggacatcatggtgcgcaaaacggcacagggatggcaggcggagctcaatccg
gaagtggtgccgaagctgcgtatcaaccatctatacgcgaatattctgcgcaataaccgc
ggcgatccgggcagtggatcgttgcgccagcaactgcaggaagcacgctggctgatcaag
aatatccagcagcggttcgagacgatcctgcgggtcgcccaggctattgtcgagcgtcaa
aagagcttttttgtgcacggcgaaattgccatgcgccccttggttttgcgagaaattgct
gatacgctgggcctacacgagtcaactgtctcgcgtgtgacaaccggtaaatacatgctg
accccattcgggacgcttgaatttaagtacttcttcggatcacacgtttcgactgacacg
ggcggcgcggcctcttcaacggctattcgcgcgctcatcaagcaactgataggagcggaa
aacccgaaatctcctctttcagacagccgcatagccgaactgctggcggaacagggcttc
gtggtcgcacggcgtaccgttgcgaagtatcgcgaagcgctgaagattccggcagtcaac
ctgcgcaagtctctgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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