KEGG   Paraburkholderia fungorum: OI25_508
Entry
OI25_508          CDS       T03799                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bfn  Paraburkholderia fungorum
Pathway
bfn03030  DNA replication
bfn03430  Mismatch repair
bfn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bfn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OI25_508 (dnaE)
   03430 Mismatch repair
    OI25_508 (dnaE)
   03440 Homologous recombination
    OI25_508 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfn03032]
    OI25_508 (dnaE)
   03400 DNA repair and recombination proteins [BR:bfn03400]
    OI25_508 (dnaE)
Enzymes [BR:bfn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OI25_508 (dnaE)
DNA replication proteins [BR:bfn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     OI25_508 (dnaE)
DNA repair and recombination proteins [BR:bfn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     OI25_508 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C RecG_wedge GRP
Other DBs
NCBI-ProteinID: AJZ58533
Position
1:complement(577755..581327)
AA seq 1190 aa
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGK
GVKPIAGCDVWITNPDDRDKPSRLLLLVKNRRGYLNLCELLSKASLTNQYRGRAEIEAGW
LESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRCGQPGGE
QYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTSEQY
FRTQEEMAKLFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLEQLYPDTAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMK
EEPLLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDAASFS
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREV
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQHRE
LFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRYGLGAIK
GSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQLIA
SVSLAMEAAEQASANAMQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYLSGH
LFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEVT
VFNETFEANKPLFKEDELLVVQGSARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVQMN
GNADASALRRVLEAHSAGKDEPQAAPAPAASSRGGNGNGGGGGRNGGGYGGGGQRQAVQI
PNGLAVQVVYRSENAQGEMRLGDAWRVKPTDELLAALRGEFAGSSIEIVY
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgtcagatccccgcttcgttcatctccgcgtccactccgaattctcgattgccgacggc
atcgtgcgccttgacgacatcgtcaaggctgccgccaaagacggtcagggtgcgctcgcc
cttaccgacctcggcaacgcgttcggcctcgtccgtttttacaaggaagcccgtggcaaa
ggggtcaaacccattgccggctgcgacgtctggatcaccaatccggacgaccgcgacaag
ccttcgcgtttgctgctgctggtcaagaaccggcgcggctatctgaatctgtgcgaactg
ctcagcaaggcatcgctcaccaaccagtatcgcggccgcgctgaaatcgaggccggctgg
ctcgaatccggtctgggtgaaggcctgctggcgctgtcgggtgctcaacagggcgacatc
ggcctcgcgctcgcggccggcaacgaagaagcggccaaacgcaacgcgttgcattgggcg
aaggtgtttccgggcggcttctatatcgaactgcaacggtgtggtcagcccggcggcgag
caatacgtacaacaggcggtggcgctcgcggcgtcgttgaaattgccggtggtggccact
caccccatgcagttcatgacgccggacgatttcaccgcgcacgaagcgcgcgtgtgtatt
tccgaaggcgacattctggcgaatccgcgccgctcgaagcgctttacgtccgaacagtat
ttccgcacgcaggaagagatggcgaagctgttcgcggacattccgtcggcgctcgccaat
agtgtggaaattgccaagcgttgcaacctgacgctcgaactcggcaagccgaagctgccg
ctcttcccgacgcccgacggcatgtcgcttgacgactacctcgtgcagttgtcgaaagag
ggcctcgaaaagcgtctcgaacagttgtacccggatacggccgagcgcgaagcgcagcgc
gaaacgtattaccagcgcctcgaattcgagtgcggcacgatcatcaagatgggcttcccg
ggctacttcctgatcgttgcggactttatcaactgggccaagaacaacggcgtgccggtc
ggaccgggccggggttcgggcgcaggttcgctggttgcgtacgcgctcggcgtgaccgac
ctcgatccgctccgctacaacctgctgttcgaacgtttcctgaatccggaacgggtctcg
atgcccgacttcgacatcgacttctgtcagcacggccgcgaccgtgtgattcagtacgtg
aaagacaaatacggcgcggacgcggtatcgcagatcgccaccttcggcacgatggcggcg
aaggcggcggtgcgggatatcggccgcgtgctcgatcttggttatatgttcacggacggg
atcgccaagctgattccgttcaagccgggcaaacacgtcaccatcgctgatgcgatgaag
gaagagccgctgctgcaggagcgcttcgacaacgaagacgaagtgcgtcagttgctcgag
ctcgcccagcgcgtggaaggtctcacgcgcaacgtcggcatgcacgcgggcggcgtgttg
atcgcgcccggcaagctcacggatttctgtccgctctatacgcagggcgacgaaagcggc
gtcgtgagccagtacgacaaagacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ttgggcctcaccacgctgaccattctggattgggccgagcgttatatccgccgtctcgat
ccttcgaagaaagactggtcgctcgcgcaggtgccgctcgacgacgctgcgtcgttctcg
atcctgaagaaagcgaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgctgaaagacgcgcagcctgaccgcttcgaggacatcatcgcgctcgtcgcgttgtac
cgtcccggcccgatggacctgatcccgagcttctgcgcgcgtaagcacggccgcgaagtg
gtggagtatccggacccgcgtgtggaacctgttctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgccgcgcgatgggtaagaagaaggccgaggaaatggcccagcaccgcgag
ctgttccgtcagggcgccgcgaaaaacgggctgaccggcgagaaagcggacgaaatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcgtatgcg
ctgctcgcgtactacacggcgtggctgaaggcgcaccatccggccgaattcatggcggcg
aatatgtcgctcgccatggacgacacggacaaggtcaagatcctgttcgaggattgcctc
gcgaacaagatggctgtgctgccgccggacgtcaacctgtcggcgtaccgtttcgagccg
gtcgcggagccggacggcaagcgctcgaaaacgatccgctatggtctcggcgcgatcaag
ggcagcggccagaatgcgatcgaggaaatcctgcgtgcacgcgaagaaggtccgtttatc
gacatcttcgacttctgcaaccgggtcgaccgccggatcgtcaatcgccggacggtggaa
gccttgatccgcgccggtgcgttcgacacgctgcacgccaatcgcgcgcagctgatcgcc
tcggtctcgctggccatggaggcggccgaacaggctagcgccaacgcaatgcaagccggc
ctgttcgacatgggcgatgcgccgtcgcaagggcatgaactggtcgacgagccggaatgg
ccggaaaagaagaagctgcaggaagagaaggccgcgctcggcttctacctgtcgggccat
ctgttcgatgcctacaaggacgaagtgcgtcgcttcgtgcgtcagaagatcggcgaattg
aaggaagggagggacaagctggtcgccggtgtgatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgttgctcgacgacggcacgggccaatgcgaagtgacc
gtcttcaatgagacttttgaggcgaataagccgttattcaaggaagacgagttgctggtg
gtgcaaggctcggcgcgtaacgacgcgttcacgggcggcatccgtttcacggtcgatacg
gtgatggacctcggtcgcgcccgctgtcgttatgcggaagccgtgaaggtgcagatgaac
ggcaatgcggacgcatcggcattgcggcgcgtgctcgaagcacatagcgcgggcaaggac
gagccgcaagctgcgccggcgccggcggcctcgtcgcgcggcggcaacggtaacggaggc
ggtggcgggcgcaacggcggaggctatggtggcggtggccaacgccaggccgtgcagatc
ccgaacgggctcgcagtgcaggtggtttatcgcagcgagaatgcgcaaggtgaaatgcgt
ctgggcgacgcatggcgcgtaaagcccaccgacgaactgctcgcggccttgcgtggcgag
ttcgcaggaagctcgatcgagattgtttattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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