KEGG   Bacteroides fragilis YCH46: BF4419
Entry
BF4419            CDS       T00202                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bfr  Bacteroides fragilis YCH46
Brite
KEGG Orthology (KO) [BR:bfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfr03032]
    BF4419
   03400 DNA repair and recombination proteins [BR:bfr03400]
    BF4419
Enzymes [BR:bfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BF4419
DNA replication proteins [BR:bfr03032]
 Prokaryotic type
  DNA Topoisomerases
   BF4419
DNA repair and recombination proteins [BR:bfr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BF4419
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim
Other DBs
NCBI-ProteinID: BAD51157
UniProt: Q64MY0
Position
5052137..5054482
AA seq 781 aa
MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDIEKNFKPKYEIPAEK
QELVDKLKEEASKAETVWLASDEDREGEAISWHLYEVLKLKPENTKRIVFHEITKTAILK
AIEQPRDIDINLVNAQQARRILDRIVGFELSPVLWKKVKPALSAGRVQSVAVRLIVERER
EIQAFKSEASYRVTAVFLVPDADGKLVEMKAELARRLKTKKEAQKFLESCKAATFSIEDI
VTRPVKKSPAAPFTTSTLQQEAARKLGFTVAQTMMVAQKLYESGLITYMRTDSVNLSEYA
TEGSKVAIAQMMGDQYVHPRHFATKTKGAQEAHEAIRPTYMENQTIEGSAQERKLYDLVW
KRTIASQMADAELEKTTATIGISNGNDKFTATGEVIKFDGFLRVYKESYDDDNEQEDESH
LLPPLKKGQMLEHQGIVATERFTQRPSRYTEASLVRKLEELGIGRPSTYAPTISTIQQRE
YVEKGDKPGEERSFDILTLKDNQITDIKHTEIVGAEKSKLLPTDIGTVVNDFLTEYFPNI
LDYNFTANVEKQFDEIAEGDKKWTSIMKDFYKDFHPSVETTLATKTEHKVGERILGEEPK
TGKPVSVKIGRFGPVVQIGTADDTDKPRFAQMKKGQSMETITLEEALDLFKLPRKVGEFE
DKTVTIGTGRFGPYVYHNSKYVSLPKTYDPLEVTLDEAIELILAKREAEAKKHIKKFDED
AEMEILNGRYGPYIAYKGSNYKIPKDVVPVDLNYQTCLEIIKLQSEKAENAPKRGRYAKK
K
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgcagaaaaaccttgtcattgtcgaatctccagcaaaagcaaaaacgattgaaaagttt
cttgggaaagattttaaagtcctctcaagttacggacatattcgcgacctgaagaaaaaa
gaattttctatcgatatagaaaagaatttcaaacccaaatacgaaatacccgcagagaaa
caagagctggttgataaactgaaagaagaagcaagcaaagcagaaaccgtatggctcgca
tccgatgaggaccgggagggagaagccatttcatggcacctttacgaagtcctgaaatta
aaacctgaaaatacgaaacgtatcgtttttcacgaaatcaccaaaacagctatactgaag
gctatcgaacagccacgcgacattgacatcaacctggtgaatgctcagcaggcacgccgt
atcttagaccgtatcgtgggtttcgagctttcacctgttttgtggaaaaaggtaaaacct
gcactttctgccggtcgggtacaatcggttgccgtacgtctgatcgtagaacgcgaacgt
gagatacaggctttcaagagcgaagcttcttatcgtgtcacagctgttttcctcgtaccg
gatgctgacggcaagctggtagagatgaaagcagaactggcacgccgcctgaagacaaag
aaggaagcccaaaaattcctcgaatcatgcaaggcagccacattctctatcgaagatatc
gtaacccgcccggtaaagaaaagcccggcagccccatttaccacctcaaccctacaacag
gaagctgcccgcaaactcggcttcactgtagcgcaaaccatgatggttgcacagaagctt
tacgaatcgggattaatcacctatatgcgtaccgactcggtaaatctgtctgaatacgcc
acagagggaagcaaagttgccatcgcacagatgatgggcgaccaatatgtgcatccacgc
catttcgctacgaagaccaaaggagctcaggaagcgcacgaagctatccgcccgacttac
atggaaaaccagaccatcgaaggatcggctcaggaaagaaaactatacgacctggtttgg
aaacgtaccatagcctcacaaatggcagacgccgaactggaaaagacaacggcaaccatc
ggtatcagcaacggtaacgataaatttaccgctaccggagaggtgatcaagttcgatggt
tttctgcgtgtatacaaagaatcgtatgatgacgacaatgaacaagaagacgaaagccac
ctgctgccacccctgaagaaaggacaaatgctggaacatcagggaatcgtagctaccgaa
cgtttcacacaacgtccgtcacgctataccgaagccagcctggtgcgcaagctggaggaa
ctgggaatcggacgtccgtcaacctacgcaccgaccatctctaccatccaacaacgcgaa
tatgtggagaagggggataaaccgggagaagagcgctcgttcgatatactgaccttaaaa
gataatcagattacggatatcaaacatacggaaattgtcggagcagagaaatcaaaacta
ttgccaacggacatcggcactgtagtcaatgacttcctgaccgaatacttccccaatatc
ctggattataactttacggcaaacgttgaaaaacaattcgacgagatagctgaaggcgat
aagaaatggacaagcatcatgaaggatttctataaggacttccatccttcagtagaaacg
acactggctaccaaaaccgaacacaaagtaggtgaacggattctgggagaggaacctaaa
accggaaagcccgtatcggtgaagatcggacgtttcggcccggtagtacagatcggtacg
gccgatgacacagacaagccacgctttgcacagatgaagaaaggacagtctatggagacc
atcactctggaagaggcactggacttattcaaactgccgcgcaaagtcggagaatttgaa
gataaaaccgtaacaatcggtaccggacgcttcggaccttatgtatatcataattctaaa
tatgtgtctttgcccaaaacttatgacccgctggaggtcacactggacgaagctatcgag
ctaatactggctaaacgtgaagcggaagcgaaaaagcacatcaagaagtttgatgaagat
gcagaaatggaaatcctcaacggcagatacggaccatacatcgcttacaaaggaagtaac
tacaaaattcccaaagacgtggtaccggtcgatctgaattaccagacctgcctggaaatc
ataaaactgcaaagcgaaaaagcagaaaacgctccgaaacgcggacgctacgctaagaaa
aaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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