KEGG   Botrytis cinerea (Gray mold): BCIN_08g06440
Entry
BCIN_08g06440     CDS       T01072                                 
Symbol
Bclsm3
Name
(RefSeq) Bclsm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
bfu  Botrytis cinerea (Gray mold)
Pathway
bfu03018  RNA degradation
bfu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bfu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BCIN_08g06440 (Bclsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BCIN_08g06440 (Bclsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bfu03019]
    BCIN_08g06440 (Bclsm3)
   03041 Spliceosome [BR:bfu03041]
    BCIN_08g06440 (Bclsm3)
Messenger RNA biogenesis [BR:bfu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BCIN_08g06440 (Bclsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BCIN_08g06440 (Bclsm3)
Spliceosome [BR:bfu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BCIN_08g06440 (Bclsm3)
 Complex C
  U2 snRNP components
    BCIN_08g06440 (Bclsm3)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 5430659
NCBI-ProteinID: XP_024550567
Position
8:join(2374896..2375018,2375070..2375168,2375221..2375257,2375314..2375351)
AA seq 98 aa
MADIDDGTSAPAEPLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYV
VEESEDDDGEEIVKTVVKKSEMLFVRGDSVILISPRSS
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcagatattgatgacggtacatctgcaccagcggaacctcttgatttggtgcgactt
tgtctcgatgaggttgtttatgtaaaattgaggggagacagagaattgaaaggaaggcta
catgcttatgatagtcattgcaatttagtattgggggatgtggtggagacaatttacgtt
gtggaggagagcgaggacgatgatggggaggagatcgtaaagacggttgttaagaaatcc
gagatgttgtttgttagaggcgacagtgttatacttatctcgcccagatcctcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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