KEGG   Burkholderia gladioli BSR3: bgla_1g02860
Entry
bgla_1g02860      CDS       T01464                                 
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bgd  Burkholderia gladioli BSR3
Pathway
bgd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bgd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    bgla_1g02860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bgd03021]
    bgla_1g02860
   03400 DNA repair and recombination proteins [BR:bgd03400]
    bgla_1g02860
Enzymes [BR:bgd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     bgla_1g02860
Transcription machinery [BR:bgd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     bgla_1g02860
DNA repair and recombination proteins [BR:bgd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      bgla_1g02860
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 DUF6744 PYNP_C Baculo_ME53
Other DBs
NCBI-ProteinID: AEA58982
UniProt: F2LHQ5
Position
1:333147..337409
AA seq 1420 aa
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIRDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNGKGEGMSFTGVSEVLRAYENK
EVELASRVNVRITEMVHNEDKSEGAPQFVPKISLYATTVGRAILSEILPAGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPTQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGKQTR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTALTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDLGRERERHKIPYGATLLQLDGDVIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARRTKEV
SDRERFDQIAAEEAFEFGIPETPAADTPDAVESQQHPSAE
NT seq 4263 nt   +upstreamnt  +downstreamnt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagtcttcgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcctggtcgttcggcgaagtcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgggatggtctgttctgcgcgaag
atcttcgggccgatccgcgactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgatatcgaacgcgtgctgtac
ttcgaagcctacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaggaggattactacaacaaggtcgaggaatacggtgacgagttccgcgccgagatg
ggcgcggaaggcgttcgcgagctgctgcgcgcgatcaacatcgacgaacaggtcgagacg
ctgcgcaccgagctcaagaacaccggctccgaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgatcctcgaa
gtcctgccggtgctgccgccggagctgcgtccgctggtgcccctcgacggcggccgtttc
gcgacctcggacctgaacgacctgtatcgccgcgtgatcaaccggaacaaccgtctgaag
cgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgattcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgccaac
aagcgtccgctcaagtcgctggccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacg
ctgaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagcccttc
atcttcaacaagctcgaagtgatgggcgtggccaccaccatcaaggccgcgaagaaggaa
gtcgagaaccagacggcggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctgtcgctggaagcgcagatggaagcg
cgcacgctgatgctggcctcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtactacgcgacgcgcgaagccgtcaacggc
aagggcgagggcatgtccttcacgggcgtgtcggaagtcctgcgtgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccacaacgaggac
aagtcggaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgaccaccgtcggc
cgcgcgatcctgtcggaaatcctgccggccggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggtctgcgc
gcgaccgtggtgttcgccgaccagctgatgcagtcgggcttccgtctcgcgacgcgcgcc
ggtatctcgatctgcgtggacgacatgctggtgccgacgcagaaggaaaccatcgtcggc
gatgccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcc
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctctcgacggagccggtggtcgatcgcgacggcaagcaaacgcgt
caggaatcgttcaactcgatctacatgatggccgactcgggcgcgcggggttccgcggtc
cagatccgtcagctggccgggatgcgcggcctgatggcgaagccggacggctcgatcatc
gagacgccgatcacggcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctggtcgacgtcacgcaggatctggtggtggtcgaggacgattgcggc
acgagtaacggcgtggccatgaaggccctggtggaaggcggtgaagtcgtcgaggcgctg
cgcgaccggattctcggccgcgtggccgtggccgacgtggtcaacccggaaacccaggaa
acgctgtacgaatcgggcaccctgctcgacgagacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaggtgcgcgtgcgcaccgcgctgacctgcgaaacgcgttacggcctgtgc
gctgcctgctacggccgcgacctgggccgcggttcgctcgtcaacgtcggcgaggcggtc
ggcgtgatcgccgcgcaatcgatcggcgagccgggcacgcagctgaccatgcgtaccttc
cacatcggcggcgcggcttcgcgtgcggcggtggcttcgtcggtcgaggcgaagagcaac
ggcacggtccgcttcacggcgaccatgcgctacgtcaccaacgcgaagggcgagcagatc
gtcatttcgcgttcgggcgaggccatgatcaccgacgatctcggccgcgagcgcgaacgt
cacaagatcccgtatggcgcgacgctgctgcagctcgacggcgacgtgatcaaggccggc
acgcaactggccacctgggatccgctgacgcgcccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgccaagcagatcgacgacgtgacg
gggctgtcgacgctcgtcgtgatcgacgtgaagcgccgcggctcgcaagcctcgaagagc
gtgcgcccgcaggtcaagctgctcgacgcgaacggcgaggaagtgaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaggcgcgttcgccgaaggatgcc
ggcatcctggccgaagtcacgggtaccacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcacggatctcgagggcaaccagcacgagttcctgatcgccaaggaaaag
caggtcctggtccacgatgcccaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaggtgcaggacgtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttc
atcccgggcgagcaggtcgagcgttcggacatgcttgacgaaaacgatcgcatgatcgcg
gaagacaagcgtccggccacctacgagaacatcctgctgggtatcacgaaggcgtcgctg
tcgacggattcgttcatctcggcggcatcgttccaggaaacgacgcgcgtgctgacggaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcgttccacaaggcacgccggaccaaggaagtc
tcggatcgcgagcgtttcgaccagatcgcggcggaagaggccttcgagttcggtatcccg
gaaacgccggctgccgacacgcccgacgccgtcgagtcgcagcagcacccgagcgcggag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system