KEGG   Burkholderia sp. CCGE1003: BC1003_1569
Entry
BC1003_1569       CDS       T01314                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgf  Burkholderia sp. CCGE1003
Pathway
bgf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BC1003_1569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgf03400]
    BC1003_1569
Enzymes [BR:bgf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BC1003_1569
DNA repair and recombination proteins [BR:bgf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BC1003_1569
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ADN57539
UniProt: E1T7A9
Position
1:1796833..1799757
AA seq 974 aa
MNDRLDLYNRKRRFDETPEPAGTRPAKKRGGRGAAHPEAAEGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPLGGPAEAARAYRAGKLKFHLHGEKLHGGWTLVRSHMRGNADKEQWLLIKEPDDEARD
ESEYDILAERPGSVLGGESAPAKAKGKAKGGSRAATGKSQMASVRGDPKRPDIVATRSNE
SLRELAASPAIEGAVKARLPAALKPQLATLVDATPPGDDWAYEIKFDGYRVLARIDASAK
GHGVQVFTRAGNDWTARFSRQVKAFGQLGLESAWLDGEAVVLDENGVPSFQALQNAFDSN
RPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSADDLLKS
ACDMALEGIIGKRRDSGYVSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVH
DSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASPPRERSRTPVHWVEPVLVAE
CNFAEWTSDGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEADTAPKKRAARSK
GTGKTAAATADELAEGTAEKNARKPVEPAAKSAAKPAAKAAAKSGASAKRTATSDTDNDT
ENDTHAQSPASRSRKSASPAEVAGVRISHPDRVIDKSTGARKIDLVQYYESVARWMLPHL
ADRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQHPGLDPGHPPLITVDSVKALVGAAQM
GTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWERMIEAALLTRTLLEELGLTSFCKTSG
GKGLHVVVPLAKHAGWDEVKGFSQAVAQHMASTLPKYFSAKMGAQNRKQKIFVDYLRNNR
GSSTVAAFSVRARPGLGVSVPLAWDEVAQTTGGDQWNIRNLHERLAQLKSDPWAEYPKTR
QRITAAMRKRLSGA
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgaacgaccgactcgacctgtacaaccgcaagcgccgtttcgacgaaacgccggagccc
gcgggcacccgcccggcgaagaaacgcggcggccgtggcgcggcgcaccccgaggcggct
gagggactctcgtacgtgatccaggagcaccacgcgcggcgtctgcattacgacttccgg
ctcgaactgaacggcgcgctgctctcgtgggcggtgccgaagggtccgtgtctcgatccg
tcggtcaagcgccttgcggtgcatgtggaagaccatccggtcgaatacggcagcttcgaa
ggcgagattccgcctggcaattacggcgcgggcacagtgatcgtatgggaccgcggcacc
tgggagccgctcggcggaccagccgaggcggcgcgcgcctatcgcgccggcaagctcaag
tttcatttgcatggcgagaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcaacgcggacaaggagcagtggctcctcattaaggaacccgacgacgaggcgcgcgac
gaaagcgaatacgacattctcgctgaacggcccggcagcgtgctgggcggcgagtccgcg
cctgcgaaggcgaaggggaaggccaagggcggcagccgcgccgcaaccggaaaaagccag
atggcttcggtgcgtggcgacccgaagcgccctgacatcgtggcaacgcgcagcaacgag
tccctgcgcgaactcgccgcatcgccggctatagaaggggcggtgaaagcgcgcctgcct
gccgcgctcaagccgcaactggcgacgctcgtcgacgccacgccgcccggcgacgactgg
gcgtacgagatcaagttcgacggctatcgcgtgctcgcccgcatcgacgcgagtgcgaaa
ggccacggcgtgcaggtgttcacgcgcgcgggtaacgactggaccgccaggttcagccgg
caggtgaaagcgttcgggcagctgggactggagagcgcgtggctcgacggcgaagccgtg
gtgctcgacgagaacggcgtgccgagcttccaggcgctgcagaacgcgttcgactccaac
cggccgcaggacattgtcgtgtatctgttcgacgtgccgtttctgaacggctacgacttg
cgcggcgtgccgctgcaacagcgccgcgcgatcctgcgcgcgcttctcgaaccggtcgac
gacagcgtgctgagattttcgaacgatttcgaattcagcgccgacgacctgctgaaaagc
gcgtgcgacatggcgctcgaaggcatcatcggcaagcggcgcgacagcggctatgtgtcc
ggccgctcggcgacgtggatcaagctgaagtgccgccgccgtcaggagttcgtgattggc
ggctattcggaaccgtcgggcagccgcgcggcgttcggcgcgctgctattgggcgtgcac
gacagcaaaggcaagctgcagtatgcagggcgcgtcggcacaggattcgacgctgcgttg
ctgcgctcggtgaagaaggaactcgacgcgcatgagacgaagcgcatgccgttcgcgagc
ccgccgcgtgagcgcagtcgcacgccggtgcattgggtggagccggtgctggtcgccgaa
tgtaattttgccgaatggacgagcgacggcatcgtgcgccaggcgtcgttcgtgagtctg
cgcaaggacaagccggcgcgccagatcgtcaaggaagcaccacgaaaaggggacgacgtg
caacagcaaaccgatatcgaagccgacaccgcgccgaagaaacgtgcggcgcgcagcaag
gggacaggcaaaacggcagctgcgacagctgacgaactcgcggaaggaaccgctgaaaaa
aacgccaggaagccagttgaacccgcggctaagtccgcggctaaacccgcggcgaaagca
gcggcgaaatccggcgcatcggcgaagcggaccgccacgagcgacactgacaacgacact
gagaacgacacccacgcgcagtcccccgcgtcgcggtccagaaaatcggcgtcgcctgcg
gaagtcgccggggttcgcatatcgcatccggaccgcgtgatcgacaagagcaccggcgcg
cgcaagatcgacctcgtgcagtactacgaatcagttgcgcgatggatgttgcctcatctc
gccgaccggccagtgtcgctcgtgcgtgcgccggaggatatcggcggcgaactgtttttc
cagaagcacacacagaaactttcgatccccaacatcacgcagcatcccgggctcgatccg
gggcatcctccgctcatcacggtggatagcgtcaaggcgctggtcggcgcggcgcaaatg
ggcaccatcgaatttcacacgtggaacggcgtggcgtcgaatatcgaaaagcccgaccgc
gtcgtattcgatctggacccggacccgtcgcttggctgggagcgaatgatcgaggccgcg
ctgctgacacgcacgctgctcgaggaactcgggctcacgtcgttctgcaagacgagcggc
ggcaagggcctgcacgtcgtcgtgccgctcgcgaaacacgcgggctgggacgaagtgaag
gggttctcgcaggccgtcgcgcagcacatggcaagcacgttgcccaaatacttcagcgcg
aagatgggcgcgcagaatcgcaagcagaagatcttcgtcgactatctgcgcaataaccgc
ggctcgagcacggtcgcggcgttttcggtgcgggcgcggccggggctcggcgtttcggtg
ccgctcgcgtgggacgaagtcgcgcagaccacgggcggcgatcagtggaacatcaggaac
ctgcacgagcgcctcgcccaattgaagagtgacccgtgggccgagtatccgaagacgcgt
cagcgcattaccgcggccatgcgcaagcgcctgagcggcgcatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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