KEGG   Brachybacterium ginsengisoli: CFK41_11425
Entry
CFK41_11425       CDS       T05099                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bgg  Brachybacterium ginsengisoli
Pathway
bgg03030  DNA replication
bgg03430  Mismatch repair
bgg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bgg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFK41_11425
   03430 Mismatch repair
    CFK41_11425
   03440 Homologous recombination
    CFK41_11425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bgg03032]
    CFK41_11425
   03400 DNA repair and recombination proteins [BR:bgg03400]
    CFK41_11425
Enzymes [BR:bgg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CFK41_11425
DNA replication proteins [BR:bgg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CFK41_11425
DNA repair and recombination proteins [BR:bgg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CFK41_11425
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon tRNA_anti_2 HHH_3 DUF655 B1
Other DBs
NCBI-ProteinID: ATG55305
UniProt: A0A291GYM7
Position
complement(2562150..2565722)
AA seq 1190 aa
MASADSDDFVHLHVHTDYSLLDGAAKIDKLVAETARQGQSAVAITDHGYLFGAYEFYKAA
TSAGVKPIIGIEAYVTPGTSRHDRTRVQWGTREQQLAGDDVSARGAYTHMTLLSRSTEGM
HNLFRLGSAASLDGQMGKWPRMDREILSKYSEGLIATSGCPSGEVQTRLRLGQFDEAVKA
AGEYQDMFGKGHYFIELMDHGLDIEKRVTKDLLEVAKAVGAPLVATNDLHYVTEQDATIQ
DVLLCINSGSRLNDPDRFKFGGSGYFLKSAQQMRELFREFPEACDNTLTIAEMCEVEFRT
TNEGANYMPNFPTPAGEDEQSWFIKEVQRGLEYRYPSGIPDEVQKRADYEVSVILQMGFP
GYFLVVSDYIKWAKEQGIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFERFLNPERVS
MPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVITYGVMKTKNSLKDASRVLDYPYAMGDR
LSKALPPTVMGKDISIKGIFDPEDRRYAEAGEFRRIHEEDPDVQKVVEIAKGVEGLTRGW
GVHACAVIMSSHPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGLRNLTILSDA
VQNMERNGKEALDLEALPFDDPATYELLQRGDTLGVFQLDGSGMRTLLRQMKPDQFGDIT
AVSALYRPGPMGMNSHTNYALRKNGLQEMTPIHPELEEPLSEILGETYGVIVYQEQVMQT
AQKVAGYSLGQADILRRAMGKKKKAELDKQYASFEAGMKDNGFSAAAVKALWDTLLPFSD
YAFNKSHSAAYGVISYWTGYMKANHPTEYMAALLTSSQENRDRLGLYLGDCRHRGITVLP
PDVNESDLYFSAVGEDIRFGLSAIRNVGANVVEEIIRAREEKGAFTSFTDFLDKVPLSVC
NKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFADVFGGGGGG
EDDMATGSAATITIPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIAQNSSTSISAL
ADDGAVEDGAMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLMFPSTYQTVATEL
AEDLIVSMKGRVDTSKGMPELRVMEMTIPETGGGADGPVVIALPALRASERIVSELRGVL
EDNPGSSEVRLRLQEPGRTTLMQLDKRLSVTPSAALYASLKTLLGPSCLQ
NT seq 3573 nt   +upstreamnt  +downstreamnt
atggcttccgcggactccgatgattttgtgcacctccacgtccacaccgactactcactc
ctggacggggccgcgaagatcgacaaactcgtcgccgagaccgcacgtcagggccaatcc
gcggtggcgatcacggaccacggctacctcttcggcgcctacgagttctacaaggccgcc
acgagcgccggcgtgaagccgatcatcggcatcgaggcgtacgtgacgcccgggacgagc
cgtcacgaccgcacccgcgtgcagtggggcacccgcgagcagcagctcgcgggagacgac
gtctccgcccgcggcgcctacacccacatgaccctgctctcccgctccaccgaggggatg
cacaacctgttccggctcggctccgccgcgtcgctggacggtcagatgggcaagtggccg
cgcatggaccgcgagatcctctcgaagtactccgaggggctcatcgccacctccggctgc
ccctccggcgaggtgcagacccgcctgcgcctgggccagttcgacgaggccgtcaaggcc
gccggcgagtaccaggacatgttcggcaagggccactacttcatcgagctgatggaccac
gggctcgacatcgagaagcgggtcaccaaggacctgctcgaggtcgccaaggccgtcggc
gccccgctggtggccaccaacgacctccactacgtcaccgagcaggatgcgacgatccag
gacgtcctgctgtgcatcaactcgggctcccgcctgaacgatcccgaccgcttcaagttc
ggcggctccggctacttcctgaagtccgcgcagcagatgcgcgagctgttccgggagttc
cccgaggcctgcgacaacaccctgaccatcgccgagatgtgcgaggtggagttccgcacc
acgaacgagggcgcgaactacatgcccaacttccccacccctgccggggaggacgagcag
tcctggttcatcaaggaggtccagcgcggcctcgagtaccgctacccctcgggcatcccc
gacgaggtgcagaagcgcgccgactacgaggtctccgtcatcctccagatgggcttcccg
ggctacttcctcgtcgtctcggactacatcaagtgggccaaggagcaggggatccgcgtg
ggcccgggccgaggctcgggcgccggctccatggtcgcctacgccatgcgcatcaccgac
ctcgacccgctcgagcacggtctgctgttcgagcggttcctgaaccccgagcgcgtctcg
atgcccgacttcgacgtcgacttcgatgatcgccgccgcggcgaggtcatcgagtacgtg
gagcgcaagtacggcgacgaccgcatcgcgcaggtcatcacctacggcgtcatgaagacg
aagaactccctcaaggacgcctcgcgcgtgctggactacccgtacgcgatgggcgaccgc
ctctccaaggcgctgccgcccaccgtcatgggcaaggacatctccatcaagggcatcttc
gacccggaggacaggcgctacgccgaggccggggagttccgccggatccacgaggaggat
ccggacgtccagaaggtcgtggagatcgccaagggcgtggagggcctgacccgaggctgg
ggcgtgcacgcctgcgcggtcatcatgtccagccacccgctggtcgacatcgtcccgatg
atgcgccgcccctccgacggccagatcatcacccagttcgagtaccccacgctcgagacc
ctgggcctgctgaagatggacttcctggggttgcggaacctcacgatcctctccgatgcg
gtgcagaacatggagcgcaacggcaaggaggcgctcgacctcgaggcgctgccgttcgac
gacccggcgacctacgagctgctgcagcgcggtgacaccctgggcgtgttccagctggac
ggctccggcatgcgcaccctgctgcggcagatgaagcccgaccagttcggggacatcacc
gcggtctcggcgctgtaccggccgggcccgatgggcatgaactcgcacaccaactacgcg
ctgcgcaagaacggcctgcaggagatgacgccgatccacccggagctcgaggagccgctc
tcggagatcctcggcgagacctacggcgtgatcgtgtaccaggagcaggtcatgcagacg
gcgcagaaggtcgccgggtacagcctgggccaggcggacatcctccgtcgcgccatgggc
aagaagaagaaggcggagctggacaagcagtacgcctcgttcgaagccgggatgaaggac
aacggattctccgccgccgccgtgaaggcgctctgggacaccctgctccccttctccgac
tacgccttcaacaagtcgcactccgcggcctacggcgtgatctcctactggaccggctat
atgaaggccaaccaccccaccgagtacatggccgcgctgctcacctcgagccaggagaac
cgcgaccgcctgggcctctacctcggcgactgccgccatcggggcatcacggtgctgccc
ccggacgtcaacgaatcggacctctacttctccgccgtcggcgaggacatccgcttcggc
ctctccgcgatccgcaacgtgggcgcgaacgtggtcgaggagatcatccgcgcccgtgag
gagaagggcgccttcacctccttcaccgacttcctggacaaggtcccgctgagcgtgtgc
aacaagcgcaccatcgagtcgctcatcaagggcggcgccttcgacgagctcggcgcgaac
cgccgctcgctggtgctgatccacgaggacgcggtggactccgtggtcgacgtgaagcgc
aaggaggcccagggccagtacgacctcttcgccgacgtgttcggcggcgggggcggcggc
gaggacgacatggccaccggctccgccgcgaccatcacgatcccggacctgcccgaatgg
gaccgcaaggagaagctcgccttcgagcgcaacatgctggggctgtacgtctcggaccac
ccgctgtacgggctcgagcacgtcatcgcccagaactcctcgacctcgatcagcgcgctc
gccgacgacggcgccgtcgaggacggcgccatggtcacgatcgccgggctcatcacctcc
ctgcagcgcaagaccaccaagaagggcgacatgtgggcgatcgccacggtcgaggacctc
gagggctcgatcgactgcctcatgttcccctcgacctatcagacggtcgccaccgagctc
gccgaggacctgatcgtctcgatgaagggccgggtagacacctccaagggcatgccggag
ctgcgcgtcatggagatgaccatcccggagaccgggggaggggccgacgggcccgtcgtc
atcgccctgcccgccctgcgggcgagcgagcgcatcgtcagcgagctgcgcggggtcctg
gaggacaatcccgggtccagcgaggtgcgcctgcgtctgcaggagccgggccgcaccacg
ctcatgcagctggacaagcgcctctcggtcaccccgtcggccgcgctgtacgcctcgctg
aagacgctgctgggccccagctgcctccagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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