KEGG   Alkalicoccobacillus gibsonii: BGM20_08560
Entry
BGM20_08560       CDS       T04820                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bgi  Alkalicoccobacillus gibsonii
Pathway
bgi03030  DNA replication
bgi03430  Mismatch repair
bgi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BGM20_08560
   03430 Mismatch repair
    BGM20_08560
   03440 Homologous recombination
    BGM20_08560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bgi03032]
    BGM20_08560
   03400 DNA repair and recombination proteins [BR:bgi03400]
    BGM20_08560
Enzymes [BR:bgi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BGM20_08560
DNA replication proteins [BR:bgi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BGM20_08560
DNA repair and recombination proteins [BR:bgi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BGM20_08560
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB tRNA_anti_2 DNA_pol_IIIA_C
Other DBs
NCBI-ProteinID: AOL30681
Position
complement(1648304..1651651)
AA seq 1115 aa
MSFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGIN
PIIGLTASVFTDDSELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKPKWLHSYREG
IIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQPFKGNQVLSEQILKL
SEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDLPDLDLKPLEEMQNIY
REHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLTDICMEGLRSRFGKPDE
RYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHEKGIVTGPGRGSAAGSLVAYVLYITDV
DPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDEVIQYVQQKYGAMHVAQIITFGTLAAK
AALRDVGRVFGVSPKEADQLAKLIPSRPGMTLDEARQQSPQLDKRLRESSLLQQVYSIAR
KIEGLPRHASTHAAGVVLSEEPLTDVVPLQEGHEGIYLTQYAMDHLEDLGLLKMDFLGLR
NLTLIESITSMIEKEENIKIDLSSISYSDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLK
PSGLEDIVAVNALYRPGPMENIPLFIDRKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIM
MIASRMAGFSLGEADLLRRAVSKKKKEILDRERSHFVEGCLKKEYSVDTANEVYDLIVKF
ANYGFNRSHAVAYSMIGCQLAYLKAHYPLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRI
LPPSVNKSSFPFTVENGSVRYSLRAIKSVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKS
VNRKMLEALIFSGAMDEFGQNRATLLASIDVALEHAELFAADDDQMGLFLDESFSIKPKY
VETEELPLVDLLAFEKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVKRQLSLGVLL
SKIKTIRTKTGQNMAFLTLSDETGEMEAVVFPEQFRQLSPVLREGALLFTAGKCEVRQDK
IQFIMSRAELLENMDAEKAPSVYIKIESSQHSQEILAKIKRILLEHKGETGVYLYYERQK
QTIKLPESFHINADHQVLYRLKELLGQKNVVLKQW
NT seq 3348 nt   +upstreamnt  +downstreamnt
atgtcttttgttcacctgcaagtgcatagcgggtatagcctgctaaacagcgccgcggct
gtggaagagctcgtcagtgaagctgacaggctcggatatgcgtctttggcgctgacagat
gatcatgtcatgtacggagctattcaattttataaagcttgcaaggcgagagggatcaac
ccaataatcggtttgacggcttctgtttttacagatgacagcgaacttgaagcatacccg
ctcgtcctgctggcaaaatcaaatacaggctatcaaaacctgctgaaaatcagcagcgtt
ctgcaatctaaatcaaaaggcggactgaagccgaaatggcttcacagttatcgagaaggg
attatcgcaataacgcccggcgaaaaaggatatattgaaacgcttcttgaaggagggctg
ttcgaacaggctgctcaagcctcgctggaatttcagtctatattcggaaagggagctttt
tatttctcctatcagccttttaaagggaatcaagtcttgtctgagcagattctaaagcta
tcagaagaaacgggtatccctgttacggccacaggcgatgtgcattacataaggaaggaa
gataaggctgcctaccgttgtttgaaagcgattaaagcgggggaaaaactgacggatgca
cccgctgaagatttgcctgatctcgatttgaaaccactcgaagaaatgcaaaacatttat
cgagagcatcccgaggcactgcaagcttctgtagagatcgcagaacaatgccgggttgac
gtcagtctcgggcagacccgtctaccgtcttttccgaccccagacggaacgtccgctgat
gattatttaacggatatctgtatggagggactccgcagccgtttcggcaagcccgatgaa
cgataccttcgccgtcttcaatatgagcttgatgtcatcaagcggatgaagttcagcgat
tactttctgatcgtgtgggattttatgaagcacgcccatgaaaaagggattgttacagga
ccgggaaggggttctgcggcaggttctcttgtggcatatgtgctgtatatcacagatgtt
gacccgattaagcatcaccttctatttgaaagatttttaaatcccgaacgcgtcagcatg
ccggatattgatattgactttcccgatactagaagggatgaagtcattcaatatgttcag
cagaaatacggtgcgatgcacgtcgcacagattatcacctttggaacacttgcggcaaag
gcggcgctccgggacgtcggcagagtattcggcgtcagcccgaaggaggcagatcagctt
gcaaaactcattccttcaagaccgggaatgacgctggatgaagcgagacagcagtcaccg
cagctggataagcggcttcgggagtcaagcctgcttcagcaagtctattcaattgcacgg
aaaatagaaggactgccaaggcatgcatcaacccacgcagcgggcgttgtcctgagtgaa
gaaccgttaacagatgttgttccgcttcaagaagggcatgaagggatctatttaacgcaa
tacgcgatggaccatcttgaagacttgggccttttaaaaatggatttcttaggtttgagg
aatctgacacttattgaatccatcacttcaatgattgaaaaagaagaaaatattaaaata
gatctttcaagtatttcctacagcgatgacaaaacgttctccttgctgtcaaaaggggat
acgacaggcattttccagcttgaatctgcagggatgagaagcgtcttgaaacggctgaaa
ccttcgggcctagaagatattgtggcggtcaatgcactgtaccggccgggtccgatggaa
aatattccgttatttatcgaccgtaaacacggccgggcgcctgttcactatcctcatgaa
gatttaaggagcattttggaagatacatatggcgtcattgtgtatcaggaacaaattatg
atgattgcttcccgtatggcggggttttctttaggcgaagcggacctattgagaagggcg
gtcagcaaaaagaaaaaagaaatcctggacagagagcgaagccattttgttgaagggtgc
ttaaaaaaggagtattctgtagacactgcaaatgaggtctacgatttaatcgtcaaattc
gcaaactatggctttaacagaagccatgcggtggcatacagcatgatcgggtgccagctt
gcgtatttgaaagctcattatccgttatattttatgtgcggattgctgacaagcgtcatt
ggcaatgaggataaaatctctcaatatctttacgaagcaaaggggagcgggattcgtatc
cttcctccgtcagtgaataaaagcagttttccgtttacagttgaaaacggatctgtcaga
tacagcctccgcgcgataaaaagtgtaggcgtctcagcagtcaaagatatatataaagca
agaaaagagaaaccatttgaagatcttttcgatttctgctttcgcgtgccgtcaaaaagc
gtaaatcgcaaaatgcttgaagcacttatcttttctggtgcgatggacgaattcggccaa
aaccgggccacgctgctcgcatccattgatgttgctttggaacatgctgagctattcgcc
gcggacgatgaccaaatgggattgtttttagatgaatcgttttcaattaagccgaagtat
gtggagacggaggagcttcctctggtggatttacttgcgtttgaaaaggaaacgcttggc
atttatttttcaaatcatcccctctccgccttccgaaaacagctcactgcgcaaggagca
gtctccattctgcaggctcagcgggcagtcaaaaggcagctttcactaggcgttctgctg
tcgaagatcaaaacgattcggacgaaaacaggtcaaaacatggcgtttttaacgctcagt
gatgaaaccggcgagatggaagccgtagtcttccctgaacaattcagacagctttctccc
gttttaagagaaggcgctcttttgttcactgcggggaaatgtgaagttagacaagataag
atccaattcatcatgtcccgggcagaattattagaaaatatggatgcagaaaaagcgcca
tcggtttatataaaaatagaaagcagtcagcacagccaggagatcctggcaaagattaag
cgcattttgctggagcataaaggggaaacaggcgtttatctctattatgaaaggcaaaaa
cagacgattaagctacctgagtcgttccatatcaatgcagatcaccaggtgttatatcgc
ttaaaagagctgttgggtcaaaaaaacgtcgttttaaaacagtggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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