KEGG   Bordetella holmesii 44057: D558_3270
Entry
D558_3270         CDS       T03379                                 
Name
(GenBank) exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
bhm  Bordetella holmesii 44057
Pathway
bhm03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    D558_3270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bhm03400]
    D558_3270
Enzymes [BR:bhm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     D558_3270
DNA repair and recombination proteins [BR:bhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     D558_3270
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-ProteinID: AIT27911
Position
complement(3057539..3058324)
AA seq 261 aa
MQLATWNVNSLNVRLPQVIAWLADNPVDALCIQELKLADDKFPLEAFTQIGYHAAWAGQK
TYNGVAILTREPGQAMVRNIPGFDDPQQRVIAVTLPTPAGEVRIICAYCPNGQSVGSDKY
AYKLEWFTALHRWLQEELRAYPRLAILGDYNVAPADEDVHNPEKWEGQVLVSEPERAALK
SLLDLGLTDAFRLFEQPEKSFTWWDYRMFAFRRNAGLRIDHILLSDALKHTCTACVIDKA
PRGNEQPSDHTPVIATLDLSA
NT seq 786 nt   +upstreamnt  +downstreamnt
atgcaactagccacctggaacgtcaactccctgaacgtgcgcctgccgcaagtcatcgcc
tggctggccgacaacccggtcgatgccctgtgcatccaggaactcaaactggccgatgac
aagttcccgctcgaggccttcacccagatcggctaccacgccgcctgggccggccagaaa
acgtataacggcgtggccatcctcacccgcgaacccggccaggctatggtgcgcaacatc
cccggcttcgacgatccgcaacagcgcgtcatcgcggtcaccctgcccactccggccggt
gaggtgcgcatcatttgtgcgtactgccctaacggccagagtgtaggcagcgacaaatac
gcctacaaacttgaatggttcactgccctgcaccgctggctgcaggaagaactgcgcgcg
tatccacgcctggccatcctgggcgactacaacgtcgcccctgccgatgaagacgtccac
aaccccgaaaaatgggaaggccaggtcctcgtctccgaacccgagcgcgcggccctcaag
agcctgctggaccttggtctgactgacgccttccgcctcttcgagcaacccgagaaatct
ttcacgtggtgggattaccgcatgttcgccttccgccgcaatgccggcctgcgcatcgac
catatcctgctctccgatgccctgaaacacacctgcaccgcctgcgtcatcgacaaagcg
ccgcggggcaacgaacagccctcggatcacaccccggtcatcgccacactcgacctgagc
gcctga

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